FC929004

Overview
NameFC929004
Unique NameFC929004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_YEAST (60S ribosomal protein L32 OS=Saccharomyces cerevisiae GN=RPL32 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.328e-24
Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = -3
Query:  266 DRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARL 577
            DR   V ENWR+ KGID  VRR+F+G +  P IGYGS+KKT+   P+G K F+V NV +LE L MH +TY AEIAHN+S K R  I+ R   L + VTN   RL
Sbjct:   23 DRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRL 126          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_CANAL (60S ribosomal protein L32 OS=Candida albicans GN=RPL32 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23
Identity = 53/104 (50.96%), Postives = 75/104 (72.12%), Query Frame = -3
Query:  266 DRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARL 577
            DR   V ENWR+ KGID  VRR+F+G +  PNIGYGS+KKT+   P G+K ++V NV +L++L++H ++Y AEIA +VS++KR EIV +  +L V VTN   +L
Sbjct:   24 DRYHRVAENWRKQKGIDSCVRRRFRGTIPQPNIGYGSNKKTKFLNPAGYKVYLVKNVKDLDVLLLHTKSYAAEIASSVSSRKRVEIVAKAKKLGVKVTNPKGKL 127          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_CANGA (60S ribosomal protein L32 OS=Candida glabrata GN=RPL32 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = -3
Query:  266 DRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARL 577
            DR   V ENWR+ KGID  VRR+F+G +  P IGYGS+KKT+   P+G K  +V N+ +LE L MH ++Y AEIAHNVS+K R  ++ R   L V VTN   RL
Sbjct:   24 DRYHRVSENWRKQKGIDSVVRRRFRGNISEPTIGYGSNKKTKFMSPSGHKVVLVSNLKDLETLTMHTKSYAAEIAHNVSSKNRVTLLARAKALGVKVTNAKGRL 127          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_ENCCU (60S ribosomal protein L32 OS=Encephalitozoon cuniculi GN=RPL32 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.235e-19
Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = -3
Query:  248 DRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 577
            DR   VK +WRRP GID +VR++ KG   MP+I Y   K+ RH LPNG +K  + N+N+L  L   NR YC EIAH V  +KR  IV R  +L + + N  ARL  + EE
Sbjct:   30 DRYKRVKPSWRRPHGIDSKVRKRCKGEREMPSIKYKKPKEIRHLLPNGLRKVRIFNINDLTPLTSLNRFYCGEIAHAVGARKRIAIVNRAKELGICLLNGNARLIPEIEE 139          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_PYRFU (50S ribosomal protein L32e OS=Pyrococcus furiosus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = -3
Query:  281 WRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTN 550
            WRRPKGID ++R K KG    P+IG+ S K  R   P+G+++ +VHNV ELE L    +   A IAH V  KKR EI++R  +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL--DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLN 127          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_PYRHO (50S ribosomal protein L32e OS=Pyrococcus horikoshii GN=rpl32e PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -3
Query:  281 WRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTN 550
            WRRPKGID ++R K KG    P+IG+ S +  R   P+G+++ ++HNV ELE L    R   A IAH V  KKR EI++R  +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELERL--DPRRQAARIAHTVGKKKRIEILKRAEELGIKVLN 127          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_TRIHA (60S ribosomal protein L32 OS=Trichoderma harzianum GN=rpl32 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = -3
Query:  329 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELL----MMHNRTYCAEIAHNVSTKKR 583
            Q DR   V  +WR+PKGID RVRR+F+G + MP IGYGS+KKTR   P+G   F +HN   L       M       AEIA  VS++KR
Sbjct:   22 QSDRFDRVGSSWRKPKGIDGRVRRRFRGTIRMPKIGYGSNKKTRFLTPSGHNAF-LHNARTLSCAAGCSMQSTDPSAAEIATPVSSRKR 109          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_PYRAB (50S ribosomal protein L32e OS=Pyrococcus abyssi GN=rpl32e PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = -3
Query:  281 WRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTN 550
            WRRPKGID ++R K KG    P+IG+ S +  R   P+G+++ ++HNV ELE L    +   A IAH V  KKR EI++R  +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELEKL--DPKRQAARIAHTVGKKKRIEILKRAQELGIKVLN 127          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_METKA (50S ribosomal protein L32e OS=Methanopyrus kandleri GN=rpl32 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = -3
Query:  281 ENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTN 556
            E WRRPKG   ++RRK K    MPN GYGS KK R   P+G+++ +V+N  +LE   +  +   A IA  V  +KR+EI+E+  +L +VV N
Sbjct:   41 EKWRRPKGRHSKMRRKLKSKPKMPNPGYGSPKKVRGLHPSGYEEVLVYNPKDLE--KIDPKRQAARIASRVGRRKRQEILEKAEELGIVVLN 130          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_THESM (50S ribosomal protein L32e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = -3
Query:  281 WRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTN 550
            WR+PKG D ++R K KG    P+IG+ S K  R   P+G+++ +V+NV +LEL+   ++   A IA  V  KKR  I+ER  +L + V N
Sbjct:   38 WRKPKGTDSKMRVKLKGKARSPSIGWSSPKAVRGLHPSGYEEVLVYNVKDLELI--DSKRQAARIAATVGKKKRIMIIERARELGIKVLN 125          
The following BLAST results are available for this feature:
BLAST of FC929004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RL32_YEAST6.328e-2453.8560S ribosomal protein L32 OS=Saccharomyces cerevis... [more]
RL32_CANAL1.841e-2350.9660S ribosomal protein L32 OS=Candida albicans GN=R... [more]
RL32_CANGA2.036e-2251.9260S ribosomal protein L32 OS=Candida glabrata GN=R... [more]
RL32_ENCCU1.235e-1947.2760S ribosomal protein L32 OS=Encephalitozoon cunic... [more]
RL32_PYRFU4.546e-1446.6750S ribosomal protein L32e OS=Pyrococcus furiosus ... [more]
RL32_PYRHO1.323e-1345.5650S ribosomal protein L32e OS=Pyrococcus horikoshi... [more]
RL32_TRIHA1.727e-1348.3160S ribosomal protein L32 OS=Trichoderma harzianum... [more]
RL32_PYRAB2.947e-1344.4450S ribosomal protein L32e OS=Pyrococcus abyssi GN... [more]
RL32_METKA2.947e-1343.4850S ribosomal protein L32e OS=Methanopyrus kandler... [more]
RL32_THESM1.617e-1141.1150S ribosomal protein L32e OS=Thermococcus sibiric... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BG12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929004 ID=FC929004; Name=FC929004; organism=Citrus clementina; type=EST; length=684bp
TTTTTTTTTTTTTTTTTATGGCATAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAACTTGACATAACATTAATCATGCTCCACAA
AAGACAACAAATTCAAAATATCATTCAGGTGACAAATACAAAATACGTCA
CAATTCACCCCTGGAAATGTTCATCCATTCCAAAAACAACCTAGGAAACA
TTTGGCCAAAAGCCAACACTAACACAAAATATAGAAACCAATTTTTACTC
CTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGACCACAACAACCA
ATTGTGCACCACGCTCGACAATCTCCTTTCTCTTCTTGGTGGATACATTG
TGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATCAATAGTTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAAATAGT
GGCGTGTTTTCTTGTCCGAGCCGTAACCAATATTGGGCATCAAAACACAT
CCTTTGAACTTTCTCCTGACACGTCAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACCCTGGGGCCTCTTGAACTTCT
TGAAACGCTTCTTCACTATCTTCTTGGTCAGCAAACGAACAGCCATTTTT
TCTAAAACGATGAACCGCGGGCTAACTGCCCCCA
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