FC929004

Overview
NameFC929004
Unique NameFC929004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_THEGJ (50S ribosomal protein L32e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  281 WRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTN 550
            WRRPKGID ++R K KG    P+IG+ S +  R   P+G+++ +VHNV ELE +        A IA  V  +KR+ I+ R  +L + V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKPRSPSIGWSSPRAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIARTVGARKREAIIARAKELGIKVLN 125          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_THEON (50S ribosomal protein L32e OS=Thermococcus onnurineus (strain NA1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  281 WRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTN 550
            WRRPKGID ++R K KG    P+IG+ S +  R   P+G+++ +VHNV ELE +        A IA  V  +KR+ I+ R  +L V V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKARSPSIGWSSPRLVRGLHPSGYEEVLVHNVKELEAI--DPARQAARIARTVGARKREMILARAKELGVKVLN 125          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_PYRKO (50S ribosomal protein L32e OS=Pyrococcus kodakaraensis GN=rpl32e PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  281 WRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTN 550
            WRRPKGID ++R K KG    P+IG+ S K  R   P+G+++ +VHNV ELE +        A IA  V  +KR+ I+ R  +L V V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKPRSPSIGWSSPKAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIAGTVGARKREMILARAKELGVKVLN 125          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_SULSO (50S ribosomal protein L32e OS=Sulfolobus solfataricus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = -3
Query:  278 KISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNK 571
            ++  +E WRRP G D + R K +G   + ++GY   KK R + P+G ++ +VHNVNEL  +          I+ +V  KKR EI+ +  +L + V+N+
Sbjct:   37 RLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKKVRGFHPSGLRQVIVHNVNELVKVQNQKDNVIVTISSSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_MAIZE (60S ribosomal protein L32 (Fragment) OS=Zea mays GN=RPL32 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = -3
Query:  248 TYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 373
            TYCAEIAHNVSTKKRKEIVER AQL +VV  KLAR  SQE+E
Sbjct:    1 TYCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42          
The following BLAST results are available for this feature:
BLAST of FC929004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RL32_THEGJ2.758e-1141.1150S ribosomal protein L32e OS=Thermococcus gammato... [more]
RL32_THEON3.602e-1142.2250S ribosomal protein L32e OS=Thermococcus onnurin... [more]
RL32_PYRKO3.602e-1143.3350S ribosomal protein L32e OS=Pyrococcus kodakarae... [more]
RL32_SULSO4.704e-1134.6950S ribosomal protein L32e OS=Sulfolobus solfatari... [more]
RL32_MAIZE6.144e-1180.9560S ribosomal protein L32 (Fragment) OS=Zea mays G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BG12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929004 ID=FC929004; Name=FC929004; organism=Citrus clementina; type=EST; length=684bp
TTTTTTTTTTTTTTTTTATGGCATAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAACTTGACATAACATTAATCATGCTCCACAA
AAGACAACAAATTCAAAATATCATTCAGGTGACAAATACAAAATACGTCA
CAATTCACCCCTGGAAATGTTCATCCATTCCAAAAACAACCTAGGAAACA
TTTGGCCAAAAGCCAACACTAACACAAAATATAGAAACCAATTTTTACTC
CTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGACCACAACAACCA
ATTGTGCACCACGCTCGACAATCTCCTTTCTCTTCTTGGTGGATACATTG
TGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATCAATAGTTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAAATAGT
GGCGTGTTTTCTTGTCCGAGCCGTAACCAATATTGGGCATCAAAACACAT
CCTTTGAACTTTCTCCTGACACGTCAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACCCTGGGGCCTCTTGAACTTCT
TGAAACGCTTCTTCACTATCTTCTTGGTCAGCAAACGAACAGCCATTTTT
TCTAAAACGATGAACCGCGGGCTAACTGCCCCCA
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