FC929016

Overview
NameFC929016
Unique NameFC929016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15284 contig Ccv1_Contig15284:62..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACOD_CYPCA (Acyl-CoA desaturase OS=Cyprinus carpio PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.447e-13
Identity = 51/165 (30.91%), Postives = 76/165 (46.06%), Query Frame = 2
Query:  338 MHLLALFAPFCF------TWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDK--DSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIXXXXXXXXXXXFPFIVWG 808
            +HL AL+  F F      TW    + F   ++   LGIT   HR  SHRS+K    L+   A     + Q +  +W   HR HH++ +++ DPH+ + GF+FSH+ WL  +    V+E+ G    + DL+      F R  Y   P             P+ VWG
Sbjct:   49 LHLGALYGLFLFPSARALTW----IWFFGCLLFSALGITAGAHRLWSHRSYKASLPLQIFLALGNSMAFQNDIYEWSRDHRVHHKYSETDADPHNAVRGFFFSHVGWLLVRKHPDVIEK-GRKLELSDLKADKVVMFQRRFY--KPSVLLMCFFVPTFVPWYVWG 206          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: SCD5_HUMAN (Stearoyl-CoA desaturase 5 OS=Homo sapiens GN=SCD5 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.469e-13
Identity = 49/175 (28.00%), Postives = 80/175 (45.71%), Query Frame = 2
Query:  290 RNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKD--SVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIXXXXXXXXXXXFPFIVWG 808
            RN   + +   G V ++ L+    P    W     A+  +++  L G+T   HR  SHRS++    L    A     + Q +  +W   HR HH++ +++ DPH+   GF+FSH+ WLF +    V+E+ G   +V DL   P  R  R  Y +  +            P+ +WG
Sbjct:   48 RNVVLMSLLHLGAVYSLVLIPKAKPLTLLW-----AYFCFLLAAL-GVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEK-GRKLDVTDLLADPVVRIQRKYYKISVV--LMCFVVPTLVPWYIWG 213          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACOD1_RAT (Acyl-CoA desaturase 1 OS=Rattus norvegicus GN=Scd1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.211e-13
Identity = 43/143 (30.07%), Postives = 62/143 (43.36%), Query Frame = 2
Query:  407 YVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIXXXXXXXXXXXFPFIVWGMVRKHFPF 832
            Y +   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y   P             P+  WG    H  F
Sbjct:  106 YYLISALGITAGAHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY--KPGLLLMCFILPTLVPWYCWGETFLHSLF 246          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACOD_MESAU (Acyl-CoA desaturase OS=Mesocricetus auratus GN=SCD PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.565e-12
Identity = 40/136 (29.41%), Postives = 59/136 (43.38%), Query Frame = 2
Query:  404 LYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIXXXXXXXXXXXFPFIVWG 808
            +Y V  + GI    HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH    GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y   P             P+  WG
Sbjct:  101 VYYVISIEGIGAGVHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETYADPHDSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY--KPAILLMCFILPTFVPWYFWG 234          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACO1_YEAST (Acyl-CoA desaturase 1 OS=Saccharomyces cerevisiae GN=OLE1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.037e-11
Identity = 37/113 (32.74%), Postives = 56/113 (49.56%), Query Frame = 2
Query:  407 YVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYIL 745
            Y   G + IT  +HR  SHRS+     L   +A  G  S++G+   W  +HR HH++ D+ RDP+    G W+SHM W+  K +   +     ++ D+      RF    YIL
Sbjct:  148 YYAVGGVSITAGYHRLWSHRSYSAHWPLRLFYAIFGCASVEGSAKWWGHSHRIHHRYTDTLRDPYDARRGLWYSHMGWMLLKPNPKYKARA--DITDMTDDWTIRFQHRHYIL 258          
The following BLAST results are available for this feature:
BLAST of FC929016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACOD_CYPCA1.447e-1330.91Acyl-CoA desaturase OS=Cyprinus carpio PE=2 SV=2[more]
SCD5_HUMAN2.469e-1328.00Stearoyl-CoA desaturase 5 OS=Homo sapiens GN=SCD5 ... [more]
ACOD1_RAT4.211e-1330.07Acyl-CoA desaturase 1 OS=Rattus norvegicus GN=Scd1... [more]
ACOD_MESAU3.565e-1229.41Acyl-CoA desaturase OS=Mesocricetus auratus GN=SCD... [more]
ACO1_YEAST1.037e-1132.74Acyl-CoA desaturase 1 OS=Saccharomyces cerevisiae ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DA07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929016 ID=FC929016; Name=FC929016; organism=Citrus clementina; type=EST; length=844bp
AAAATCTTTCACTTTTTCACCTCTGTGTCAAGCAAGAAAAACTCAAACCG
ATAAAGTTCTGGCCTTCGGCAATTCTAACTTACAACACAAGCTAGTAAAA
ACGAGCTTTGTGTATCATGTTTATAAATATAACAAAAGAGAGTCACTAGC
AATTGTTAATGCAGCATCAATTGAATCGACAGAACCAAAGCCAGAGCCAG
AGCCAGAGCAAATTCCCGAAGTGGAAACTTATGGGAGAATTTTGTTATCT
GATGTGTTGGTGAAGAGGAGAAGAAGTTTATTTTCTGGGAGGAATTGGAA
CTCATTGGATATAAGCACAGCTGGTGTTGTTTTGGCAATGCATTTGCTTG
CTCTCTTTGCGCCATTTTGTTTCACGTGGAGTTCTCTTAGGGTTGCTTTT
GGACTTTATGTTGTGACTGGACTTCTGGGTATCACTCTTTCTTTTCACAG
AAACCTTTCTCATAGGAGTTTTAAATTACCCAAATGGCTTGAGTACTTGT
TTGCTTATTGCGGAGTTCAGTCTCTTCAGGGGAATCCAATTGATTGGGTA
AGCACACATAGGTATCATCACCAGTTTTGTGATTCCGAAAGGGATCCGCA
TAGTCCCATTGAAGGGTTTTGGTTTAGTCACATGAGTTGGCTGTTTGATA
AGGATTCTGTTCTCGAAAGGTGTGGAGGGCCAAACAATGTGGGAGATTTA
GAGAAGCAGCCTTTCTATAGATTCTTAAGAAGCACTTACATTCTCCATCC
AATTGCACTTGGAGGCTTGCTATATGCACTGGGAGGCTTTCCTTTCATTG
TGTGGGGAATGGTAAGGAAGCACTTTCCTTTTAGCTGTTCTGTT
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