FC929024

Overview
NameFC929024
Unique NameFC929024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5224 contig Ccv1_Contig5224:581..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929024 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.726e-26
Identity = 46/94 (48.94%), Postives = 69/94 (73.40%), Query Frame = 2
Query:   17 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 298
            ++F++A+WFWMT +  KPSCH+V++ E++P   DV A R  G+GL TNI+NGG+EC + G+A V NRIGF+  +C   G+  G +LDC +Q+P+
Sbjct:  197 IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of FC929024 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.796e-25
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 2
Query:    5 TDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 298
            +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG+G  + V +RIG++            D+LDCYNQ+P+
Sbjct:  113 SDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of FC929024 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.520e-24
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 298
            ATDPVLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC + G    +NRI ++  +C    + PGD+L C NQ  +
Sbjct:  205 ATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of FC929024 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.593e-24
Identity = 49/108 (45.37%), Postives = 72/108 (66.67%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQS 322
            ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G +LDC+ Q P+  ++M+ S
Sbjct:  232 ATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of FC929024 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.387e-24
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQS 322
            ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G +LDC+ Q P+   +M+ S
Sbjct:  232 ATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of FC929024 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 2
Query:   47 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 184
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
BLAST of FC929024 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.324e-11
Identity = 32/93 (34.41%), Postives = 46/93 (49.46%), Query Frame = 2
Query:    2 ATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 280
            A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG +L C
Sbjct:  217 AQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
The following BLAST results are available for this feature:
BLAST of FC929024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CHI10_ORYSJ4.726e-2648.94Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_AVESA1.796e-2551.02Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI8_POPTR1.520e-2450.00Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ2.593e-2445.37Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI3.387e-2445.37Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI4_ARAHY8.652e-1263.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]
CHI5_ORYSJ7.324e-1134.41Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1DB04RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929024 ID=FC929024; Name=FC929024; organism=Citrus clementina; type=EST; length=509bp
TGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGA
CTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGG
AAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCT
AACCACAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATG
CCGCTGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTT
GGGATTCAGCCTGGTGACAGTCTTGATTGCTACAACCAACGACCTTATGG
CCTTAATCTGATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGT
AAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTT
GTAGGTGGACAACTAAATTGTTAGTTTGTTACGCTCTTATTGTAAGTAAA
TTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCACCAAAAAAAAA
AAAAAAAAA
back to top