FC929031

Overview
NameFC929031
Unique NameFC929031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9277 contig Ccv1_Contig9277:2..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929031 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.617e-15
Identity = 70/269 (26.02%), Postives = 108/269 (40.15%), Query Frame = 2
Query:   56 PNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNYLNDLPSLDPELYRHLIFLKHYEAD----ISELELYFVILNNEY--------GEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQK-DWINMFN--EHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMN 817
            PN          L+ ++  G+++  A+F   ++D+ F      KL  +     D   L PE  R+LI + +Y  D    +  L       NN +         E    EL   G+N+ +T  N   F+       L   I  Q + F+ GF+++  + + I +FN  E E                 R  T YVGG+  +   +  FWE+++S+    QKK L+FVT   R P  G   +   F I       S    D LP + TC N
Sbjct:  600 PNFDKSKGKNSQLELYYLFGVVMGLAIFNSTILDLQFPKALYKKLCSEPLSFEDYSELFPETSRNLIKMLNYTEDNFEDVFSLTFETTYRNNNWILNDSKSSKEYVTVELCENGRNVPITQSNKHEFVMKWVEFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTIP--FKISLLGSHDS----DDLPLAHTCFN 862          
BLAST of FC929031 vs. ExPASy Swiss-Prot
Match: UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.944e-15
Identity = 74/287 (25.78%), Postives = 116/287 (40.42%), Query Frame = 2
Query:    5 FDVQYGLFKETSDHL--LYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNYLNDLPSLDPELYRHLIFLKHYEADISE----LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQ-----KDWINMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLP 832
            F+ +  LF  ++D      PNP S  +   H  FF F G ++A A+   + V + F   F  +L      L D+   D  +Y     +   + +  +    L L FV+   E G++   EL P GK   V ++N   ++ L+   R    I +Q   F RGF  ++      + +       +                 + +T Y  G+      I+ FW++LK  + E Q+  L F T     P+ GF+ L     I R       EA DRLP S TC   L +P
Sbjct:  567 FNPKNTLFLRSADDFRRFSPNPAS-KVDPLHPDFFEFTGRVIALALMHKVQVGVLFDRVFFLQLAGLKISLEDIKDTDRIMYNSCKQILEMDPEFFDSNAGLGLTFVLETEELGKRDTIELCPDGKLKAVNSKNRKQYVDLLIERRFATPILEQVKQFSRGFTDMLSHSVPPRSFFKRLYLEDLDGMLRGGENPISIDDWKAHTEY-NGFKETDRQIDWFWKILKKMTEEEQRSILFFWTSNKFVPVEGFRGLSSKLYIYRL-----YEANDRLPLSHTCFYRLCIP 846          
BLAST of FC929031 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.215e-14
Identity = 65/274 (23.72%), Postives = 118/274 (43.07%), Query Frame = 2
Query:   50 LYPNP----GSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNYLNDLPSLDPELYRHLIFLK---------HYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWINMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLP 832
            L+P+P    GS   +E+ +  F  LG  +A+++++  ++ I F   F ++       ++ +  +D  L   L +L+         + E DI   +L+   L+         EL+P G +  VT  NV  +++ V ++ +   ++QQ   F  GF  +     + +  EHE                  ++     GY  E   I+    ++   + + Q+ FL+F+TG  + P+ GF  L P   + R          D LP+  TC+N LKLP
Sbjct: 1353 LFPSPIPLLGSSPENERKISLFFALGQFVARSIYDSRIISIQFNPLFFAR--NIPLTISSVAKVDKGLANSLRYLEKLIPGKNPTNAETDIKLEDLH---LDFTLPGFPSIELIPDGASTPVTTFNVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNEPPYVPDDYLPSVMTCVNYLKLP 1621          
The following BLAST results are available for this feature:
BLAST of FC929031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
HUL4_YEAST2.617e-1526.02Probable E3 ubiquitin-protein ligase HUL4 OS=Sacch... [more]
UPL5_ARATH9.944e-1525.78E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis th... [more]
YDE1_SCHPO2.215e-1423.72Probable ubiquitin fusion degradation protein C12B... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DC01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929031 ID=FC929031; Name=FC929031; organism=Citrus clementina; type=EST; length=835bp
AGCATTTGATGTTCAGTATGGGTTATTCAAGGAAACATCTGATCACTTGC
TCTACCCTAATCCTGGATCTGGAATGATACATGAGCAGCATCTCCAGTTT
TTTCATTTTCTTGGAATTCTACTTGCAAAGGCCATGTTTGAAGGAATTCT
TGTTGATATCCCATTTGCAACATTCTTCTTGAGCAAGTTAAAACGGAAGT
ACAATTATTTGAATGACTTGCCCTCGTTAGATCCTGAATTATATCGTCAC
CTTATTTTCTTGAAGCATTATGAAGCTGACATTTCGGAGTTAGAACTCTA
CTTTGTTATTCTGAACAATGAATATGGAGAGCAAACAGAAGAGGAGCTGC
TTCCAGGAGGGAAGAACATACGTGTTACTAATGAGAATGTTATCACATTT
ATTCATCTTGTGTCCAATCACCGGCTGAATTTTCAGATACGTCAACAAAG
CTCTCATTTCCTGAGAGGCTTTCAGCAGCTTATACAGAAAGATTGGATCA
ATATGTTTAATGAGCATGAACTACAGCTGCTAATATCAGGTTCACTCGAT
AGCTTGGATTTTGATGACCTGAGACAGAACACTAACTATGTGGGAGGTTA
TCATAGTGAGCATTATGTTATTGAGATGTTCTGGGAAGTCCTCAAAAGCT
TTTCACTGGAAAACCAAAAGAAATTTTTGAAGTTTGTGACTGGGTGCTCT
CGAGGACCACTACTGGGATTCAAATATCTCGAGCCTTTATTCTGCATACA
AAGAGCTGCTGGTAGTGCTTCTGAAGAAGCTCTTGATCGGTTACCGACAT
CGGCTACTTGCATGAATCTTCTTAAGCTTCCACCA
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