FC929032

Overview
NameFC929032
Unique NameFC929032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length806
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9256 contig Ccv1_Contig9256:11..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929032 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 27/52 (51.92%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK 180
            +VYDVTD++SF +++ W+  I+++ASD+VNK+L+GNKCD+T  KVV     K
Sbjct:   93 LVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGK 144
[Close]
BLAST of FC929032 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 26/52 (50.00%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   25 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK 180
            +VYDVTD++SF N++ W+  I+++A+D+VNK+L+GNKCD+   KVV     K
Sbjct:   93 LVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGK 144
The following BLAST results are available for this feature:
BLAST of FC929032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RAB8B_DICDI3.670e-1151.92Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB8A_DICDI8.177e-1150.00Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DC02RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929032 ID=FC929032; Name=FC929032; organism=Citrus clementina; type=EST; length=806bp
GGCACGAGGTGTCTCCTCTGGTAGATTGTTTATGATGTGACAGACCAAGA
GAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACCGTTATGCTA
GTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGATCTCACTGCA
AATAAGGTTGTCTCGTACGAAACAGCCAAGGTATATCTACTTCTCTACAC
TGGCATTTTCTTTTTTTACCCCTCCCCTTAACAAGGTTCAAGCCACTTCC
TCCCCCCTCCAAATTATGTGTCAAAGTAAATTTTGTATAATGATCCGAAA
TTGCTATTTCCACCATTCTTAATGGTGAACCTTTATGTCGATTCGTATTG
CATTCATCAAGATAGTCTTTAGTTGCTGGCCAGTAAAGGCACTAGAGTTT
GAGTTGGATAAAAAGCCTTCCTTCAAAGATTATAACTCGAAGACTCCTTA
CCTTAGGAGCTGGATAAGTGATACATCTGGCGAGCATTCTGTTGACCCCT
TGTACTCTTCTTCTTTATTAGGCATTTGCAGATGAAATTGGAATACCTTT
CATGGAAACTAGTGCAAAAGATTCTACCAACGTGGAACAGGCATTCATGG
CCATGGCTGCTTCAATCAAGGATAGGTATTGATGCATATTTGCTTTCTAT
ATTAAACGCGAAATAGATTGATAGGAGTATTGTGTTTTGCCTTCTTTTTG
AAGAAGTCTTCAGATTACGTAACGCCATAACTTCATACAGTTACTTATAT
TACCTGCTATATTTGTTTTCTATATTAAACGCGAAATAGATTGATAGGAG
TATCGT
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