FC929064

Overview
NameFC929064
Unique NameFC929064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_DROMD (60S ribosomal protein L32 OS=Drosophila madeirensis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.545e-39
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_DROGU (60S ribosomal protein L32 OS=Drosophila guanche GN=RpL32 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.545e-39
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_DROBF (60S ribosomal protein L32 OS=Drosophila bifasciata GN=RpL32 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.545e-39
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_APIME (60S ribosomal protein L32 OS=Apis mellifera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.869e-39
Identity = 79/114 (69.30%), Postives = 90/114 (78.95%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +K NWR+PKGID+RVRR+FKG  LMPNIGYGS+KKTRH LP GF+K +VHNV ELE+LMM NR +C EIAH  S+KKRK IVERA QL + VT   ARLRSQE E
Sbjct:   21 RHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32P_MOUSE (Putative 60S ribosomal protein L32' OS=Mus musculus GN=Rpl32-ps PE=5 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.650e-36
Identity = 72/114 (63.16%), Postives = 92/114 (80.70%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGY S+KKT+H L +GF+KF+VHN+ E E+L+M N++Y  EIAHNVS+K RK IVERAAQL + VTN   RL S+E E
Sbjct:   22 RHQSDRYVKIKWNWRKPRGIDNRVRRRFKGQILMPNIGYRSNKKTKHTLSSGFRKFLVHNIKEPEVLLMCNKSYRAEIAHNVSSKNRKAIVERAAQLAIRVTNPNTRLHSEENE 135          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_NEUCR (60S ribosomal protein L32 OS=Neurospora crassa GN=rpl-32 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.685e-33
Identity = 66/111 (59.46%), Postives = 88/111 (79.28%), Query Frame = -3
Query:  257 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 589
            R QSDR + V   WR+PKGID+RVRR+F+G + MP+IGYGS+KKTRH +P+G K F+V NV ++ELL+MHN+TY  EIAHNVS++KR EI+ RA QL V VTN  A++ ++
Sbjct:   20 RHQSDRFMRVDSAWRKPKGIDNRVRRRFRGTLAMPSIGYGSNKKTRHMMPSGHKAFLVSNVKDVELLLMHNKTYAAEIAHNVSSRKRIEIIARAKQLSVKVTNAKAKVTTE 130          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32A_SCHPO (60S ribosomal protein L32-A OS=Schizosaccharomyces pombe GN=rpl32a PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.400e-32
Identity = 68/112 (60.71%), Postives = 88/112 (78.57%), Query Frame = -3
Query:  254 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQE 589
            R QSDR   V E+WR+P+GIDS VRR+F+G + MP IGYG++KKTR+ +PNG K F+V NV+++ELL+MHN+TY  EIA NVS +KR EIVE+A  L V VTN  A++RSQE
Sbjct:   16 RHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32B_SCHPO (60S ribosomal protein L32-B OS=Schizosaccharomyces pombe GN=rpl32b PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.949e-32
Identity = 67/112 (59.82%), Postives = 87/112 (77.68%), Query Frame = -3
Query:  254 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQE 589
            R QSD    V E+WR+P+GIDS VRR+F+G + MP IGYG++KKTR+ +PNG K F+V NV+++ELL+MHN+TY  EIA NVS +KR EIVE+A  L V VTN  A++RSQE
Sbjct:   16 RHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_DICDI (60S ribosomal protein L32 OS=Dictyostelium discoideum GN=rpl32 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.191e-29
Identity = 64/114 (56.14%), Postives = 81/114 (71.05%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSD    V  +WR+P+GID+RVRR+F G   MP+IG+GS K T+   P+GFK+FV+ NV ELE+L+M NR Y   I H VS K RK IVERAA+L++ VT   ARLRS+E E
Sbjct:   20 RFQSDLFKRVGASWRKPRGIDNRVRRRFSGSRAMPSIGFGSAKATKDVCPDGFKRFVIRNVQELEVLLMQNRRYAAVIFHGVSAKSRKAIVERAAELNIKVTTPNARLRSEERE 133          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_ASHGO (60S ribosomal protein L32 OS=Ashbya gossypii GN=RPL32 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.363e-26
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = -3
Query:  266 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 589
            R  SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKTR   P+G K ++V N+ +LE+LMMH +TY  EIA NVS+K R  I+ RA  L + VTN   RL
Sbjct:   20 RHHSDRYHRVAENWRKQKGIDSVVRRRFRGQISEPTIGYGSNKKTRFMTPSGHKTYLVSNIKDLEVLMMHTKTYAAEIASNVSSKNRVSILARAKALGIKVTNPKGRL 127          
The following BLAST results are available for this feature:
BLAST of FC929064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_DROMD1.545e-3969.3060S ribosomal protein L32 OS=Drosophila madeirensi... [more]
RL32_DROGU1.545e-3969.3060S ribosomal protein L32 OS=Drosophila guanche GN... [more]
RL32_DROBF1.545e-3969.3060S ribosomal protein L32 OS=Drosophila bifasciata... [more]
RL32_APIME5.869e-3969.3060S ribosomal protein L32 OS=Apis mellifera GN=RpL... [more]
RL32P_MOUSE4.650e-3663.16Putative 60S ribosomal protein L32' OS=Mus musculu... [more]
RL32_NEUCR3.685e-3359.4660S ribosomal protein L32 OS=Neurospora crassa GN=... [more]
RL32A_SCHPO1.400e-3260.7160S ribosomal protein L32-A OS=Schizosaccharomyces... [more]
RL32B_SCHPO6.949e-3259.8260S ribosomal protein L32-B OS=Schizosaccharomyces... [more]
RL32_DICDI7.191e-2956.1460S ribosomal protein L32 OS=Dictyostelium discoid... [more]
RL32_ASHGO4.363e-2654.6360S ribosomal protein L32 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DE02RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929064 ID=FC929064; Name=FC929064; organism=Citrus clementina; type=EST; length=723bp
TTTTTTTTTTTTTTTTTAGTGCAAAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAAGTTGACATAACATTAATCATGCTCCACAA
AAGACAACAAATTCAAAATATCATTCGGGTGACAAATAGAAAATACATCA
TAATTCAACCCTGGAAATGTTCATCCATTCCAAAGACAACCTAGGAAACA
TTTGGCCAAAAGCAAACACTAACACAAAATATACAAACCAATTTTTACTC
CTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGACCACAACATCCA
ATTGTGCAGCACGCTCGACAATCTCCTTTCTCTTCTTGGTTGATACATTG
TGGGCTATCTCAACACAATAAGTCCTGTTGTGCATCATCAAGAGTTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAGATAGT
GGCGTGTTTTCTTGTCCGAGCCGTATCCAATATTGGGCATCAAAACACAT
CCTTTGAACTTTCTCCTGACACGTGAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACTCTGGGGCCTCTTGAACTTCT
TGAGACGCTTCTTCACTATCTTCTTGGTCAGCAAAGGAACAGCCATTTTT
CTGAAACGATGAGCCGCGGCTTCTGCCAACAAAAGACAGTTGAGACAGCA
AAACATTCGGAAAAAAAAAAAAA
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