FC929064

Overview
NameFC929064
Unique NameFC929064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_YEAST (60S ribosomal protein L32 OS=Saccharomyces cerevisiae GN=RPL32 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.442e-26
Identity = 59/108 (54.63%), Postives = 72/108 (66.67%), Query Frame = -3
Query:  266 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 589
            R  SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKT+   P+G K F+V NV +LE L MH +TY  EIAHN+S K R  I+ RA  L + VTN   RL
Sbjct:   19 RHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRL 126          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_CANAL (60S ribosomal protein L32 OS=Candida albicans GN=RPL32 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.165e-25
Identity = 56/108 (51.85%), Postives = 78/108 (72.22%), Query Frame = -3
Query:  266 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 589
            R  SDR   V ENWR+ KGIDS VRR+F+G +  PNIGYGS+KKT+   P G+K ++V NV +L++L++H ++Y  EIA +VS++KR EIV +A +L V VTN   +L
Sbjct:   20 RHHSDRYHRVAENWRKQKGIDSCVRRRFRGTIPQPNIGYGSNKKTKFLNPAGYKVYLVKNVKDLDVLLLHTKSYAAEIASSVSSRKRVEIVAKAKKLGVKVTNPKGKL 127          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_CANGA (60S ribosomal protein L32 OS=Candida glabrata GN=RPL32 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.394e-24
Identity = 57/108 (52.78%), Postives = 72/108 (66.67%), Query Frame = -3
Query:  266 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 589
            R  SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKT+   P+G K  +V N+ +LE L MH ++Y  EIAHNVS+K R  ++ RA  L V VTN   RL
Sbjct:   20 RHHSDRYHRVSENWRKQKGIDSVVRRRFRGNISEPTIGYGSNKKTKFMSPSGHKVVLVSNLKDLETLTMHTKSYAAEIAHNVSSKNRVTLLARAKALGVKVTNAKGRL 127          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_ENCCU (60S ribosomal protein L32 OS=Encephalitozoon cuniculi GN=RPL32 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 56/114 (49.12%), Postives = 71/114 (62.28%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R  SDR   VK +WRRP GIDS+VR++ KG   MP+I Y   K+ RH LPNG +K  + N+N+L  L   NR YC EIAH V  +KR  IV RA +L + + N  ARL  + EE
Sbjct:   26 RHHSDRYKRVKPSWRRPHGIDSKVRKRCKGEREMPSIKYKKPKEIRHLLPNGLRKVRIFNINDLTPLTSLNRFYCGEIAHAVGARKRIAIVNRAKELGICLLNGNARLIPEIEE 139          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_PYRFU (50S ribosomal protein L32e OS=Pyrococcus furiosus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = -3
Query:  281 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTN 550
            WRRPKGIDS++R K KG    P+IG+ S K  R   P+G+++ +VHNV ELE L    +     IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL--DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLN 127          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_PYRHO (50S ribosomal protein L32e OS=Pyrococcus horikoshii GN=rpl32e PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.008e-14
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = -3
Query:  281 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTN 550
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ ++HNV ELE L    R     IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELERL--DPRRQAARIAHTVGKKKRIEILKRAEELGIKVLN 127          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_METKA (50S ribosomal protein L32e OS=Methanopyrus kandleri GN=rpl32 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = -3
Query:  281 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTN 589
            R +  R   + E WRRPKG  S++RRK K    MPN GYGS KK R   P+G+++ +V+N  +LE   +  +     IA  V  +KR+EI+E+A +L +VV N
Sbjct:   30 RQEWHRYKKLGEKWRRPKGRHSKMRRKLKSKPKMPNPGYGSPKKVRGLHPSGYEEVLVYNPKDLE--KIDPKRQAARIASRVGRRKRQEILEKAEELGIVVLN 130          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_PYRAB (50S ribosomal protein L32e OS=Pyrococcus abyssi GN=rpl32e PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = -3
Query:  281 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTN 550
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ ++HNV ELE L    +     IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELEKL--DPKRQAARIAHTVGKKKRIEILKRAQELGIKVLN 127          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_TRIHA (60S ribosomal protein L32 OS=Trichoderma harzianum GN=rpl32 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.933e-14
Identity = 44/91 (48.35%), Postives = 54/91 (59.34%), Query Frame = -3
Query:  329 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELL----MMHNRTYCVEIAHNVSTKKR 589
            R QSDR   V  +WR+PKGID RVRR+F+G + MP IGYGS+KKTR   P+G   F +HN   L       M        EIA  VS++KR
Sbjct:   20 RHQSDRFDRVGSSWRKPKGIDGRVRRRFRGTIRMPKIGYGSNKKTRFLTPSGHNAF-LHNARTLSCAAGCSMQSTDPSAAEIATPVSSRKR 109          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_SULSO (50S ribosomal protein L32e OS=Sulfolobus solfataricus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  278 RPQSDR--KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNK 589
            R  SD+  ++  +E WRRP G D++ R K +G   + ++GY   KK R + P+G ++ +VHNVNEL  +        V I+ +V  KKR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFYRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKKVRGFHPSGLRQVIVHNVNELVKVQNQKDNVIVTISSSVGFKKRLEILNKARELGLKVSNE 134          
The following BLAST results are available for this feature:
BLAST of FC929064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_YEAST7.442e-2654.6360S ribosomal protein L32 OS=Saccharomyces cerevis... [more]
RL32_CANAL2.165e-2551.8560S ribosomal protein L32 OS=Candida albicans GN=R... [more]
RL32_CANGA2.394e-2452.7860S ribosomal protein L32 OS=Candida glabrata GN=R... [more]
RL32_ENCCU1.112e-2149.1260S ribosomal protein L32 OS=Encephalitozoon cunic... [more]
RL32_PYRFU3.465e-1547.7850S ribosomal protein L32e OS=Pyrococcus furiosus ... [more]
RL32_PYRHO1.008e-1446.6750S ribosomal protein L32e OS=Pyrococcus horikoshi... [more]
RL32_METKA1.720e-1441.7550S ribosomal protein L32e OS=Methanopyrus kandler... [more]
RL32_PYRAB2.246e-1445.5650S ribosomal protein L32e OS=Pyrococcus abyssi GN... [more]
RL32_TRIHA2.933e-1448.3560S ribosomal protein L32 OS=Trichoderma harzianum... [more]
RL32_SULSO7.225e-1336.7950S ribosomal protein L32e OS=Sulfolobus solfatari... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DE02RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929064 ID=FC929064; Name=FC929064; organism=Citrus clementina; type=EST; length=723bp
TTTTTTTTTTTTTTTTTAGTGCAAAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAAGTTGACATAACATTAATCATGCTCCACAA
AAGACAACAAATTCAAAATATCATTCGGGTGACAAATAGAAAATACATCA
TAATTCAACCCTGGAAATGTTCATCCATTCCAAAGACAACCTAGGAAACA
TTTGGCCAAAAGCAAACACTAACACAAAATATACAAACCAATTTTTACTC
CTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGACCACAACATCCA
ATTGTGCAGCACGCTCGACAATCTCCTTTCTCTTCTTGGTTGATACATTG
TGGGCTATCTCAACACAATAAGTCCTGTTGTGCATCATCAAGAGTTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAGATAGT
GGCGTGTTTTCTTGTCCGAGCCGTATCCAATATTGGGCATCAAAACACAT
CCTTTGAACTTTCTCCTGACACGTGAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACTCTGGGGCCTCTTGAACTTCT
TGAGACGCTTCTTCACTATCTTCTTGGTCAGCAAAGGAACAGCCATTTTT
CTGAAACGATGAGCCGCGGCTTCTGCCAACAAAAGACAGTTGAGACAGCA
AAACATTCGGAAAAAAAAAAAAA
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