FC929069

Overview
NameFC929069
Unique NameFC929069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_SULIA (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 37/106 (34.91%), Postives = 63/106 (59.43%), Query Frame = -1 
Query:  278 RPQSDR--KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 589
            R  SD+  ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +    IA +V  KKR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134
The following BLAST results are available for this feature:
BLAST of FC929069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_SULIA5.970e-1234.9150S ribosomal protein L32e OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DE08RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929069 ID=FC929069; Name=FC929069; organism=Citrus clementina; type=EST; length=712bp
TTTTTTTTTTTTTTTTTACTGCAAAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAAGTTGACATAACATTAATCATGCTCCACAA
AAAACAACAAATTCAAAATATCATTCAGGTGACAAATACAAAATACATCA
TAATTCAACCCTGGAAATGTTCATCCATTCCAAAGACAACCTAGGAAACA
TTTGGCCAAAAGCAAACACTAACACAAAATATAAAAACCAATTTTTACTC
CTCCTCCTGGCTGCCCAACCTGGCCAATTTGTTGGTGACCACAACATCCA
ATTGTGCAGCACGCTCGACAATCTCCTTTCTCTTCTTGGTTGATACATTG
TGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATCAAGAATTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAAATAGT
GGCGTGTTTTCTTGTCCGAGCCGTAGCCAATATTGGGCATCAGAACACAT
CCTTTGAACTTTCTCCTGACACGTGAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACTCTGGGGCCTCTTGAACTTCT
TGAGACGCTTCTTCACTATCTTCTTGGTCAACAAAGGAACAGCCATTTTT
CTGAAACGATGAGCCGCGGCTTCTGCCAACAAAAGATAGTTGAAACAACA
AAACATTCGAAA
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