FC929070

Overview
NameFC929070
Unique NameFC929070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929070_ssr15 microsatellite FC929070_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15033 contig Ccv1_Contig15033:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_GLOVI (50S ribosomal protein L1 OS=Gloeobacter violaceus GN=rplA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            SKR   ++   + +  Y  + A+ LLKQ ++ KF ETAE H RL I+PKY DQQ+R+TV LP+GTGK
Sbjct:    5 SKRLKALREQVDRQTIYAPQKALELLKQTANAKFDETAETHIRLGINPKYADQQVRSTVVLPRGTGK 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_CALS8 (50S ribosomal protein L1 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            R K++ E   L +  K YD + AI L  + S  KF ET E H RLN+DP++ DQQ+R TV LP GTGK
Sbjct:    3 RGKKYQEAAKLVDKTKLYDPEEAIDLALKTSYAKFDETVEVHVRLNVDPRHADQQVRGTVVLPNGTGK 70          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_BACSU (50S ribosomal protein L1 OS=Bacillus subtilis GN=rplA PE=3 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            + K+++E   L +  K YD+  A++L+K+ ++ KF  T E  FRL +DP+ NDQQ+R  V LP GTGK
Sbjct:    4 KGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGK 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_ANATD (50S ribosomal protein L1 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            R K++ E   L +  K YD + AI L  + S  KF ET E H RLN+DP++ DQQ+R TV LP GTGK
Sbjct:    3 RGKKYQEAAKLVDKTKLYDPEEAIELALKTSYAKFDETVEVHVRLNVDPRHADQQVRGTVVLPNGTGK 70          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            S+R  +IQ   E  + Y    A++LLK++++ KFTETAEAH  L ID KY DQQLR T+ LPKGTGK
Sbjct:    5 SQRVKKIQTKVE-LRPYKGTEALNLLKELATAKFTETAEAHISLKIDTKYADQQLRTTLVLPKGTGK 70          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            SKR  E++N  E K  Y    A++LLK  ++ KF E+AEAH  L +D KY DQQLR T+ LPKGTGK
Sbjct:    5 SKRISEVRNKIENKP-YKAIEALNLLKDTATAKFVESAEAHIALKLDTKYADQQLRTTLVLPKGTGK 70          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_PHYAS (50S ribosomal protein L1 OS=Phytoplasma australiense GN=rplA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 2
Query:  524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            RSK++L +  + + KK Y L+ AI L KQ   TKF  T E  F LN+DPK  DQ LR  + LP GTGK
Sbjct:    3 RSKKYLAVSQMFDIKKRYPLQEAIKLTKQSQITKFDATVECAFHLNLDPKKADQNLRGALVLPHGTGK 70          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_DEIRA (50S ribosomal protein L1 OS=Deinococcus radiodurans GN=rplA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  530 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            KR+  ++   +  K+Y +  A +L+K++++ KF ET E HFRL IDP+ +DQ +R TV+LP GTG+
Sbjct:    6 KRYRALEGKVDRNKQYSIDEAAALVKELATAKFDETVEVHFRLGIDPRKSDQNVRGTVALPHGTGR 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_ACAM1 (50S ribosomal protein L1 OS=Acaryochloris marina (strain MBIC 11017) GN=rplA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            S+R  E++   E +  Y+   A+ LL + ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG+
Sbjct:    6 SRRMRELKQQVEDRA-YEPLEALELLCKTATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQ 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_PROM4 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            SKR   + +  E +  Y    AI+L+K+ S+ KF ET EAH RL IDPKY DQQ+R TV+LP GTG+
Sbjct:    5 SKRMASLSSKIEDRA-YPPLEAINLVKESSTAKFDETIEAHVRLGIDPKYTDQQIRTTVTLPNGTGQ 70          
The following BLAST results are available for this feature:
BLAST of FC929070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL1_GLOVI4.027e-1150.7550S ribosomal protein L1 OS=Gloeobacter violaceus ... [more]
RL1_CALS84.027e-1150.0050S ribosomal protein L1 OS=Caldicellulosiruptor s... [more]
RL1_BACSU4.027e-1144.1250S ribosomal protein L1 OS=Bacillus subtilis GN=r... [more]
RL1_ANATD4.027e-1150.0050S ribosomal protein L1 OS=Anaerocellum thermophi... [more]
RK1_RHDSA4.027e-1155.2250S ribosomal protein L1, chloroplastic OS=Rhodomo... [more]
RK1_GUITH4.027e-1153.7350S ribosomal protein L1, chloroplastic OS=Guillar... [more]
RL1_PHYAS5.260e-1150.0050S ribosomal protein L1 OS=Phytoplasma australien... [more]
RL1_DEIRA5.260e-1143.9450S ribosomal protein L1 OS=Deinococcus radioduran... [more]
RL1_ACAM15.260e-1152.2450S ribosomal protein L1 OS=Acaryochloris marina (... [more]
RL1_PROM46.869e-1152.2450S ribosomal protein L1 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DE09RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929070 ID=FC929070; Name=FC929070; organism=Citrus clementina; type=EST; length=728bp
GGCACGAGGTCTTATCTTCTTCTTCTCGGACTTTTTTTCTGGGTAGGTAT
AGCAATTTGCAATAGCAGTGCATATATACAAATTACAAAACTCAAAAAGG
TTCCAATACTGTATCCGCAAAATGGCGACATGTGGCACTACTCCGTCGTC
TCTGATGCTAACATACGCCGCCACGCCAGTACACCCGCAAGACTTGACAC
CCTCGCTGTCTCTTCTTTCTTTCAAACCCTCGAAGACTGCGGCTTTCTCA
CTGTGCACCAACCTCAGCGTTAGAGGAGGGGAGAGGAGGGCGAGCAAGTG
GCTTGATTTGTATCCGCTGAGACAGAACAAAAATGGGCTTCCTGGACACA
TGCTGGCGGCTGCTTCTGCTGTCGAAGCTGATACTGACTTGGCCACTGAC
GATGTGGAGGACGATACTCAGGGAGGTGCTGAAGGAGCAACTGCTACTGC
TACTGCTACTGCTACTATTTCAACTAAGCCTAAGAAAGGCAAGGCTGCGT
TGCCTCTCAAGAGAGACAGGACTAGGTCTAAAAGATTCCTGGAAATTCAA
AATTTGAGGGAAGGCAAGAAAGAGTATGATTTGAAGACGGCAATATCTTT
GTTGAAGCAGATGTCAAGTACAAAGTTCACGGAAACAGCTGAAGCCCATT
TTCGCCTCAACATTGATCCCAAATACAATGATCAACAGCTTAGAGCAACA
GTGAGTTTACCCAAGGGAACTGGAAAAT
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