FC929070

Overview
NameFC929070
Unique NameFC929070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929070_ssr15 microsatellite FC929070_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15033 contig Ccv1_Contig15033:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_MYCMS (50S ribosomal protein L1 OS=Mycoplasma mycoides subsp. mycoides SC GN=rplA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 2 
Query:  527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            SKRF E  +  E  K Y L  A+ L KQ S+TKF  T E  F LNIDP+  DQQ+R  V LP GTGK
Sbjct:    5 SKRFKEALSKVEKNKVYPLTQALDLAKQTSTTKFDSTVEVAFNLNIDPRKADQQIRGAVVLPAGTGK 71
The following BLAST results are available for this feature:
BLAST of FC929070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL1_MYCMS6.869e-1153.7350S ribosomal protein L1 OS=Mycoplasma mycoides su... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DE09RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929070 ID=FC929070; Name=FC929070; organism=Citrus clementina; type=EST; length=728bp
GGCACGAGGTCTTATCTTCTTCTTCTCGGACTTTTTTTCTGGGTAGGTAT
AGCAATTTGCAATAGCAGTGCATATATACAAATTACAAAACTCAAAAAGG
TTCCAATACTGTATCCGCAAAATGGCGACATGTGGCACTACTCCGTCGTC
TCTGATGCTAACATACGCCGCCACGCCAGTACACCCGCAAGACTTGACAC
CCTCGCTGTCTCTTCTTTCTTTCAAACCCTCGAAGACTGCGGCTTTCTCA
CTGTGCACCAACCTCAGCGTTAGAGGAGGGGAGAGGAGGGCGAGCAAGTG
GCTTGATTTGTATCCGCTGAGACAGAACAAAAATGGGCTTCCTGGACACA
TGCTGGCGGCTGCTTCTGCTGTCGAAGCTGATACTGACTTGGCCACTGAC
GATGTGGAGGACGATACTCAGGGAGGTGCTGAAGGAGCAACTGCTACTGC
TACTGCTACTGCTACTATTTCAACTAAGCCTAAGAAAGGCAAGGCTGCGT
TGCCTCTCAAGAGAGACAGGACTAGGTCTAAAAGATTCCTGGAAATTCAA
AATTTGAGGGAAGGCAAGAAAGAGTATGATTTGAAGACGGCAATATCTTT
GTTGAAGCAGATGTCAAGTACAAAGTTCACGGAAACAGCTGAAGCCCATT
TTCGCCTCAACATTGATCCCAAATACAATGATCAACAGCTTAGAGCAACA
GTGAGTTTACCCAAGGGAACTGGAAAAT
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