FC929080

Overview
NameFC929080
Unique NameFC929080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15024 contig Ccv1_Contig15024:1..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RLP7_YEAST (Ribosome biogenesis protein RLP7 OS=Saccharomyces cerevisiae GN=RLP7 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.494e-21
Identity = 60/131 (45.80%), Postives = 76/131 (58.02%), Query Frame = -1
Query:  352 LLFIIRIRGINAVDPKTK--KILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGF------GKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPF 720
            LLFI+R+RG  AV+   K  KIL LLRL +   GVF+K+ K    +L  + PYV  G P+L S++ LI KRG        +     I L DN I+E+  G HGIIC+ED I EI T+G  F   N FL PF
Sbjct:  141 LLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLTKNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLGDHGIICVEDIIHEIATMGESFSVCNFFLQPF 271          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RLP7_KLULA (Ribosome biogenesis protein RLP7 OS=Kluyveromyces lactis GN=RLP7 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = -1
Query:  352 EAKLLFIIRIRGINAVD--PKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQR--------IALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPF 729
            E  LLF+IR++G  AV    K  K+L LLRL ++  GVF+K+ K    +L  V PY+  G P+L S++ LI KR   ++  QR        I L DN I+E+  G  G+IC+ED I EI T+G +F +   FL PF
Sbjct:  134 EPSLLFVIRVKGPTAVKIPAKAYKVLSLLRLVELNTGVFIKLTKDVYPLLKLVSPYIVIGQPSLASIRSLIQKR--SRIMWQRPEDKEPKEIILNDNNIVEEKLGDEGVICIEDIIHEISTLGENFSKCTFFLLPF 267          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RLP7_CANGA (Ribosome biogenesis protein RLP7 OS=Candida glabrata GN=RLP7 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 52/136 (38.24%), Postives = 80/136 (58.82%), Query Frame = -1
Query:  352 NPEAKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQ------RIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPF 735
            N E +LLF++R++G  A  +  K  +IL  LRL ++   VF+K+ +   ++L  + PYV  G P+LKS++ LI KR      ++       I L DN I+E+  G  G+IC++D I EI T+G +F + N FL PF
Sbjct:  131 NGEEQLLFVLRVKGPVAASIPHKAYRILSTLRLEEVNTAVFIKLTETTFSLLKIIAPYVIVGKPSLKSIRSLIQKRSKIVYKREDEEEAKEIILNDNNIVEEKLGDCGVICIDDIIHEIATLGENFTKCNFFLQPF 266          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RLP7_ASHGO (Ribosome biogenesis protein RLP7 OS=Ashbya gossypii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18
Identity = 51/133 (38.35%), Postives = 76/133 (57.14%), Query Frame = -1
Query:  352 AKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRG------FGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPF 726
            A LLF++R+RG  A  +  K  ++L LLRL ++  GVF+++      +L  V PYV  G P+L S++ L+ KR        G+     + L DN ++E+  G  G+IC+ED I EI T+G  F + N FL PF
Sbjct:  110 ATLLFVVRVRGPAAAKIPRKAHRVLTLLRLAEVNTGVFVRLTAEVFPLLQVVAPYVVVGRPSLASIRALVQKRARVVHQRAGEAAPVEMVLNDNGVVEERLGDEGVICVEDIIHEIATMGEAFAKCNFFLLPF 242          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7_ENCCU (60S ribosomal protein L7 OS=Encephalitozoon cuniculi GN=RPL7 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18
Identity = 52/168 (30.95%), Postives = 93/168 (55.36%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRN-PYVEGGDAGNREDYINELIRRM 744
            FYV  EA+   +I IR      PK +K+L+L RL++I   V ++ NK+   ML  ++ +V +G   ++ +++L+Y +G G+    R+ LT+ FI +   G+  I C+E+ +  I      FK+ N+FL+PF           +++  + +GG  GN +D ++ L+ RM
Sbjct:   73 FYVPKEAEFFAVILIRSKCNCPPKVRKVLELFRLKRINTCVLVRNNKSTRKMLQIIKDHVAFGTIGMELLRKLVYTKGSGRNGHVRVKLTNEFIEDMFDGK--IRCIEELVHHIYNGTEMFKKVNSFLYPFHLSPPRGGFKGQKSKSFNDGGSVGNHQDLLSNLLERM 238          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RLP7_DEBHA (Ribosome biogenesis protein RLP7 OS=Debaryomyces hansenii GN=RLP7 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.767e-17
Identity = 55/136 (40.44%), Postives = 81/136 (59.56%), Query Frame = -1
Query:  352 AKLLFIIRI----RGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGF-----GKLNKQRIA-LTDNFIIEQAFGQH-GIICMEDFIPEILTVGPHFKEANNFLWPF 726
            AKLLFIIRI    +G+  V  K +K+L LLRL +   GVF+K+  A + +L  + PY+  G P+L S+++L  KR        +  + RI  L +N ++E  FG   G IC+ED I E+ T+G HFK  +N++ PF
Sbjct:   92 AKLLFIIRIPDHTKGLK-VPSKARKVLHLLRLNRPNTGVFVKLTPATVPLLKLISPYIVAGKPSLNSIRKLFQKRACISVIDEETKEPRITKLDNNGVVEDKFGDDLGCICIEDLIHELATLGEHFKTVSNWILPF 226          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RLP7_PICJA (Ribosome biogenesis protein RLP7 (Fragment) OS=Pichia jadinii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = -1
Query:  352 LLFIIRIRG-INAVDP-KTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKL------NKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPF 720
            L  I+R  G + A  P K +K+LQLLRL +I +GVF+K+ +    +L  + PY     P+L++V++L+ KR    +        +++ L DN ++E+  G  GIIC+ED I E   +   FK   +FL PF
Sbjct:   32 LYLIVRTPGPVGAKIPSKVQKVLQLLRLNKINSGVFVKLTETVYPLLKLLSPYTVIXQPSLQTVRQLVQKRATVTVTHANDEEPRQVKLNDNNLVEEKLGDEGIICIEDIIHETSHLATTFKTVTHFLDPF 162          
The following BLAST results are available for this feature:
BLAST of FC929080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RLP7_YEAST4.494e-2145.80Ribosome biogenesis protein RLP7 OS=Saccharomyces ... [more]
RLP7_KLULA1.107e-1941.91Ribosome biogenesis protein RLP7 OS=Kluyveromyces ... [more]
RLP7_CANGA5.494e-1938.24Ribosome biogenesis protein RLP7 OS=Candida glabra... [more]
RLP7_ASHGO1.224e-1838.35Ribosome biogenesis protein RLP7 OS=Ashbya gossypi... [more]
RL7_ENCCU2.088e-1830.9560S ribosomal protein L7 OS=Encephalitozoon cunicu... [more]
RLP7_DEBHA1.767e-1740.44Ribosome biogenesis protein RLP7 OS=Debaryomyces h... [more]
RLP7_PICJA2.388e-1435.88Ribosome biogenesis protein RLP7 (Fragment) OS=Pic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CB09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929080 ID=FC929080; Name=FC929080; organism=Citrus clementina; type=EST; length=744bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGAAAACAAAAAA
TAAAATTTGGAATGATAATCCAGTCTGAAGCCAAAATAACAACACTGTCA
CTGTTATAAAAAGTAAAAAAGTTTCTACTTAACTTCCAGGGAAAAGGCGG
GGAATAATAGGAAACACTAAAAGCCAAAATTTAAAATATTGATCACATCA
AAACTTCTTCAAAAGGGGTAGGATATTCTGCAAAAGCCTAGTTCATCCTT
CTGATGAGCTCATTGATGTAATCTTCACGGTTTCCGGCATCACCGCCTTC
AACATAGGGGTTCCTCTTCTTCTTCAGGCCACCCAAGGGGGCCTTGAGCT
TGAAGGGCCATAGGAAGTTGTTTGCCTCCTTGAAGTGAGGACCAACAGTC
AAAATCTCAGGGATGAAATCTTCCATGCAAATAATTCCATGCTGCCCAAA
AGCCTGTTCGATGATAAAATTGTCGGTCAAAGCAATCCTCTGCTTATTTA
ATTTGCCGAAACCCCTCTTGTAAATCAGTTCTTTGACACTCTTTAAATTG
GGGTACCCATATGTTACATAGGGCTCAACTCTGTGCAGCATATTGAGGGG
GGCTTTGTTCACTTTCAAAAAGACACCATTAAAAATCTGTCTCAAACGGA
GAAGCTGCAAAATTTTCTTGGTCTTTGGATCAACAGCATTGATACCGCGA
ATCCTGATAATGAACAAAAGCTTAGCTTCTGGGTTGACATAAAA
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