FC929094

Overview
NameFC929094
Unique NameFC929094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SYNS3 (Glycogen synthase OS=Synechococcus sp. (strain CC9311) GN=glgA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 55/142 (38.73%), Postives = 73/142 (51.41%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 413
            +D  L+PSRFEPCG+ QL AMRYG VP+V   GGLVDTV      ++  TGF    F       DPVD    +  VR   A     +  E+ + GM QD SW   A ++++  +  EV G  EPG D   +   ++   A P
Sbjct:  348 SDAFLMPSRFEPCGISQLLAMRYGCVPVVRKVGGLVDTVPPHDPAQQSGTGFCFDRF-------DPVDF--FTALVRSWEAFRHQDSWRELQRRGMRQDYSWARSAMEYDQ--MYREVCGLKEPGPDAAAVEQFSQGQDADP 478          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_ANASK (Glycogen synthase OS=Anaeromyxobacter sp. (strain K) GN=glgA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 320
            AD  L+PSRFEPCGL Q++++RYGTVP+V + GGL DTVE+       TGF+   ++            A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  368 ADLFLMPSRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVEDFDGVARGTGFRFSEYTPQ----------ALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOSL (Glycogen synthase 2 OS=Geobacter sulfurreducens GN=glgA2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 50/112 (44.64%), Postives = 63/112 (56.25%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 320
            +D  L+PSRFEPCGL QL AMRYGTVP+V  TGGL DTV        EG TGF    F+ D          A    + RALA Y   ++   +M+ GM +D+SW   A ++E
Sbjct:  372 SDLFLMPSRFEPCGLSQLIAMRYGTVPVVRHTGGLRDTVVDVTRHPREG-TGFTFEDFTAD----------ACWEAIERALAGYRDRESWRRIMRRGMHRDVSWHNAAGRYE 472          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 49/110 (44.55%), Postives = 60/110 (54.55%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLL 332
            AD +L+PSRFEPCGL QL+AM YGTVP+V + GGL DTVE    +    +G      EA   +D         R   T    +   + K GM QDLSW   AK +EE LL
Sbjct:  638 ADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRLIDALGHCLNTYRNYRT----SWEGLQKRGMMQDLSWDNAAKLYEEVLL 743          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_RHILW (Glycogen synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=glgA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 317
            D I+IPSRFEPCGL QL+ +RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  367 DAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGMLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_RHIE6 (Glycogen synthase OS=Rhizobium etli (strain CIAT 652) GN=glgA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 317
            D I+IPSRFEPCGL QL+ +RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  367 DAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGLLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKWEE 323
            D +L+PSRFEPCGL QL+AM+YGTVP+V  TGGL DTVE  F  F          A  P+ V  +   +R A++T+     +   +MK GM +D +W   A+++E+
Sbjct:  530 DILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVET-FNPFGAKGEEGTGWAFSPLTVDKMLWALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQ 634          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA1_RHIME (Glycogen synthase 1 OS=Rhizobium meliloti GN=glgA1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 45/107 (42.06%), Postives = 58/107 (54.21%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEA---VDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 317
            AD ILIPSRFEPCGL QL+ +RYG VP+VA TGGL DT+ +        + S  C       PV    +   +RR L  Y    L A +   GM  D+SW   A+++
Sbjct:  367 ADAILIPSRFEPCGLTQLYGLRYGCVPVVARTGGLTDTIIDA----NEAALSAKCATGFHFLPVTTDGLRLAIRRVLRAYNEPKLWARLQYQGMKSDVSWAKSAERY 469          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_ANADF (Glycogen synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 320
            AD  L+PSRFEPCGL Q++++RYGT+P+V + GGL DTVE+ F G+  G+         P    A+   VRRAL  +   +A   MM  GMA D SW   A+ +E
Sbjct:  367 ADLFLMPSRFEPCGLNQMYSLRYGTIPVVRAVGGLEDTVED-FDGWSRGT-GFKFRDYHP---QAMLLAVRRALEAHRDRRAWRAMMLRGMALDFSWDRSAQAYE 466          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA2_NITOC (Glycogen synthase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 317
            AD  L+PSRFEPCGL QL+A+RYGTVPI   TGGL DT+         +E  TGF     S           +A+ T ++RALA Y  ++    +   GMAQ+ SW+  AK +
Sbjct:  370 ADIFLMPSRFEPCGLTQLYALRYGTVPIARRTGGLSDTIVDATEKNLRQELATGFTFTESS----------PSALLTAIQRALACYAQSRQWRRLALTGMAQNFSWQTSAKAY 472          
The following BLAST results are available for this feature:
BLAST of FC929094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_SYNS39.802e-1538.73Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_ANASK1.280e-1440.91Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA2_GEOSL1.280e-1444.64Glycogen synthase 2 OS=Geobacter sulfurreducens GN... [more]
SSY21_ORYSJ2.184e-1444.55Soluble starch synthase 2-1, chloroplastic/amylopl... [more]
GLGA_RHILW2.184e-1441.75Glycogen synthase OS=Rhizobium leguminosarum bv. t... [more]
GLGA_RHIE62.184e-1441.75Glycogen synthase OS=Rhizobium etli (strain CIAT 6... [more]
SSY1_WHEAT2.852e-1442.45Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
GLGA1_RHIME2.852e-1442.06Glycogen synthase 1 OS=Rhizobium meliloti GN=glgA1... [more]
GLGA_ANADF3.725e-1444.76Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA2_NITOC3.725e-1442.48Glycogen synthase 2 OS=Nitrosococcus oceani (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1DF12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929094 ID=FC929094; Name=FC929094; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
back to top