FC929094

Overview
NameFC929094
Unique NameFC929094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_XANC8 (Glycogen synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKW 317
            ADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     S +          A+   + RA  T+   +L   M+   M +   W    KK+
Sbjct:  363 ADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQQASAE----------ALRRCLERAFRTFRLPSLLSAMRRAAMLRPSGWDVAGKKY 456          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SYNPW (Glycogen synthase OS=Synechococcus sp. (strain WH7803) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 52/142 (36.62%), Postives = 73/142 (51.41%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 413
            +D  L+PSRFEPCG+ QL+AMRYG VP+V   GGLVDTV      ++  TGF    F       +PVD    +  VR   A    ++  E+ + GM QD SW   A +++   +  +V G  EP  D   +   ++   A P
Sbjct:  348 SDAFLMPSRFEPCGISQLYAMRYGCVPVVRKVGGLVDTVPPHDPRQKSGTGFCFDRF-------EPVDF--YTALVRAWEAFRHPESWKELQRRGMEQDYSWARSALEYDR--MYRDVCGLKEPSPDAAAVEQFSQGQEADP 478          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_GEOSF (Glycogen synthase OS=Geobacter sp. (strain FRC-32) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 323
            +D  L+PSR+EPCGL Q+ A+RYG VP+V  TGGL DT+ +E     +   FS      D     A+   + RA+  Y  +A   +MMK GMA D SW   A K+EE
Sbjct:  372 SDIFLMPSRYEPCGLGQMIALRYGAVPVVRKTGGLADTIFDERDQPKEPNGFS-----FDEYTPEALWEALSRAVEAYSDKAAWKKMMKRGMAGDFSWNTSALKYEE 473          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_XANOR (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae GN=glgA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 317
            ADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+     LA M +  M +   W     K+
Sbjct:  398 ADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPGLLAAMRRAAMLRPSGWDVAGNKY 491          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_XANOP (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 317
            ADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+     LA M +  M +   W     K+
Sbjct:  398 ADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPGLLAAMRRAAMLRPSGWDVAGNKY 491          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_XANOM (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 317
            ADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+     LA M +  M +   W     K+
Sbjct:  398 ADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPGLLAAMRRAAMLRPSGWDVAGNKY 491          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPB (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSWKGPAKKWEETLLNLEVA 347
            AD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV +      + +         PV    ++  + +  A Y  +A  + ++ NGM  D+SW+ PA+ + +   +L  A
Sbjct:  370 ADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLSDTVVDA-NEMAIAAGVATGVQFSPVTGDMLAAALSKTRALYADRAAWQALQHNGMTADVSWRNPAQHYAQLYRSLLAA 482          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_RHILO (Glycogen synthase OS=Rhizobium loti GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 42/105 (40.00%), Postives = 59/105 (56.19%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 323
            D I+IPSRFEPCGL QL+ +RYG VP+VA TGGL DT+ +          +   +   P +  A+   +RR +  Y   A  E + + GM  D+SW   A+K+ E
Sbjct:  367 DAIIIPSRFEPCGLTQLYGLRYGCVPVVARTGGLADTIIDANEAAMAAGVATGLQFA-PNNGGAMLHAIRRLVDAYADPAAFETIQRQGMKADVSWDKSAEKYLE 470          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_ELUMP (Glycogen synthase OS=Elusimicrobium minutum (strain Pei191) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            +D  L+PSRFEPCGL Q+ +MRYGTVPIV+  GGL+DTV+  +G T +  G F ++           +  ++  AL  Y   +    ++KNGM +D SW   A+++++
Sbjct:  373 SDIFLMPSRFEPCGLSQMISMRYGTVPIVSRVGGLLDTVKGYDGITKYATGFFILE------FSETGIERSLDYALKYYQDKRCWGMLIKNGMEKDFSWTKSAQEYQD 474          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_AGRRK (Glycogen synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 317
            D I+IPSRFEPCGL QL+ +RYG VPIVA TGGL DT+ +          +   +   PV    +   +RRA+  +  + +  +M K GM  D+SW   A+++
Sbjct:  367 DAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTIIDANHAALQAKVATGIQ-FSPVTAEGLLQAIRRAIYLFQDRKVWTQMQKQGMKSDVSWGKSAERY 468          
The following BLAST results are available for this feature:
BLAST of FC929094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_XANC81.084e-1339.42Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_SYNPW1.084e-1336.62Glycogen synthase OS=Synechococcus sp. (strain WH7... [more]
GLGA_GEOSF1.084e-1342.99Glycogen synthase OS=Geobacter sp. (strain FRC-32)... [more]
GLGA_XANOR1.415e-1340.38Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOP1.415e-1340.38Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOM1.415e-1340.38Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_RHOPB1.415e-1337.72Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_RHILO1.415e-1340.00Glycogen synthase OS=Rhizobium loti GN=glgA PE=3 S... [more]
GLGA_ELUMP1.415e-1338.89Glycogen synthase OS=Elusimicrobium minutum (strai... [more]
GLGA_AGRRK1.415e-1339.81Glycogen synthase OS=Agrobacterium radiobacter (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DF12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929094 ID=FC929094; Name=FC929094; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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