FC929094

Overview
NameFC929094
Unique NameFC929094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SYNPX (Glycogen synthase OS=Synechococcus sp. (strain WH8102) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 53/142 (37.32%), Postives = 72/142 (50.70%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 413
            +D  L+PSRFEPCG+ QL+AMRYG+VP+V   GGLVDTV      +   TGF    F       +PVD    +  VR   A     +  E+ K GM QD SW   A  ++  ++  +V G  EP  D   +   ++   A P
Sbjct:  348 SDAFLMPSRFEPCGISQLYAMRYGSVPVVRKVGGLVDTVPPHSPADASGTGFCFDRF-------EPVDF--YTALVRAWEAYRHRDSWQELQKRGMQQDYSWDRSAIDYD--VMYRDVCGLKEPTPDAAMVEQFSQGQAADP 478          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP2 (Glycogen synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 46/110 (41.82%), Postives = 60/110 (54.55%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 317
            AD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV +       TG   G  FS       PV    ++  + +  A +   A    +  NGM  D+SWK PA+ +
Sbjct:  370 ADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-------PVTAQMLAKALTKTAALHADHAAWRNLQINGMTTDVSWKNPAQHY 472          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA2_BRAJA (Glycogen synthase 2 OS=Bradyrhizobium japonicum GN=glgA2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEG--FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA-LATYGTQALAEMMKNGMAQDLSWKGPA 308
            +D +++PSRFEPCGL QL A+RYG VPIV+  GGL DT+    E G   TGF+ G          PV   A++ T+R+A  A +      ++ +NG+A D+SW+  A
Sbjct:  370 SDALIVPSRFEPCGLTQLCALRYGAVPIVSRVGGLEDTIVDIGEAGREATGFKFG----------PVTADALAGTLRKANTAFHDKLTWRQLQRNGLATDVSWRSRA 466          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: SSG2_PEA (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLL 332
            +D +L+PSRFEPCGL QL+AM YGTVP+V   GGL DTV+  F  F            D  +   +   +   L TY    ++   + + GM+QDLSW   A+++EE L+
Sbjct:  641 SDILLMPSRFEPCGLNQLYAMSYGTVPVVHGVGGLRDTVQP-FNPFDESGVG---WTFDRAEANKLMAALWNCLLTYKDYKKSWEGIQERGMSQDLSWDNAAQQYEEVLV 746          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_PROM1 (Glycogen synthase OS=Prochlorococcus marinus (strain NATL1A) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 54/137 (39.42%), Postives = 72/137 (52.55%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 413
            AD  L+PSRFEPCG+ QL AMRYG +PIV   GGLVDTVE      + GS F  D    +P+D    ++ VR   A    ++  E+    M+   SW   AK++E  L+  +V G  EP  D  E+   +    A P
Sbjct:  348 ADAFLMPSRFEPCGISQLLAMRYGAIPIVRKVGGLVDTVEPYNPMNETGSGFCFD--RYEPIDF--YTSLVRSWEAYRHQKSWKELQLRAMSNKYSWDRSAKEYE--LMYKDVCGIKEPSPDAAEVEKFSYGQEADP 478          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_DESAP (Glycogen synthase OS=Desulforudis audaxviator (strain MP104C) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEETLLN-LEVAGSEPGI 365
            +D  L+PSRFEPCGL QL ++RYGT+PIV  TGGL DTV E    + + +   +       D  A+ + + RAL  Y    +A   +++N M  D SW   A ++ +   + +E    E GI
Sbjct:  380 SDMFLMPSRFEPCGLGQLISLRYGTIPIVRETGGLADTVNE----YDLATGGGNGFVFKEYDARALYSAIARALKLYREDQEAWGRLVRNAMEMDFSWARSAVEYLQVYRDAMEKVSEERGI 497          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP5 (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA--LATYGTQA----LAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 353
            AD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV +          ++       V  + V+  +  A  + T+G  +       + +NGM  D+SW+ PA+ + +   NL  A S
Sbjct:  370 ADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLSDTVVDA------NEMAIAAGVATGVQFSPVTRDMLAAALIKTHGLYSDRTTWQALQQNGMRSDVSWRNPAQHYAQLYRNLLAARS 484          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_PARDP (Glycogen synthase OS=Paracoccus denitrificans (strain Pd 1222) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   12 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 323
            D IL+PSRFEPCGL QL+ +R+GT+P+VA TGGL DTV            +   +   PVD   +S  + R  A +   A    MM N MA  + W   A+ + E
Sbjct:  357 DAILVPSRFEPCGLTQLYGLRFGTLPLVALTGGLADTVINASVAGLAAGVATGVQ-FHPVDARTLSRALTRLCALWHQPAAWQRMMDNAMAHPVGWDASARAYAE 460          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA1_GEOSL (Glycogen synthase 1 OS=Geobacter sulfurreducens GN=glgA1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 323
            +DF ++PS FEPCGL Q++++RYGT+PIV +TGGL D+V    E+  TG     +S D +A+       V T  RR        A+A ++ N MA+  +W+  A ++EE
Sbjct:  378 SDFFVMPSAFEPCGLNQMYSLRYGTLPIVRATGGLDDSVENFDEQNLTGNGFKFWSHDADALFDTVGWTVHTWYRR------KDAMAALIGNAMAKRFTWEDSAARYEE 480          
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_THIDA (Glycogen synthase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=glgA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 3
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPA 308
            AD  L+PSRFEPCGL Q++++RYGT+PIV  TGGL DT+ +      +   S +    D  DVA     VRRALA Y   +L   + + GM     W+  A
Sbjct:  377 ADMFLMPSRFEPCGLNQMYSLRYGTLPIVFKTGGLADTIVD-TNEASLADGSANGFVFDTPDVAHFVDAVRRALALYRQPSLWRRVQQTGMRLSFDWRESA 476          
The following BLAST results are available for this feature:
BLAST of FC929094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_SYNPX1.849e-1337.32Glycogen synthase OS=Synechococcus sp. (strain WH8... [more]
GLGA_RHOP21.849e-1341.82Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA2_BRAJA1.849e-1342.06Glycogen synthase 2 OS=Bradyrhizobium japonicum GN... [more]
SSG2_PEA2.414e-1340.00Granule-bound starch synthase 2, chloroplastic/amy... [more]
GLGA_PROM12.414e-1339.42Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_DESAP2.414e-1336.89Glycogen synthase OS=Desulforudis audaxviator (str... [more]
GLGA_RHOP53.153e-1337.19Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_PARDP3.153e-1340.00Glycogen synthase OS=Paracoccus denitrificans (str... [more]
GLGA1_GEOSL3.153e-1339.45Glycogen synthase 1 OS=Geobacter sulfurreducens GN... [more]
GLGA_THIDA4.118e-1342.57Glycogen synthase OS=Thiobacillus denitrificans (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DF12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929094 ID=FC929094; Name=FC929094; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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