FC929094

Overview
NameFC929094
Unique NameFC929094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1527..2233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SALSV (Glycogen synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SALPK (Glycogen synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SALPC (Glycogen synthase OS=Salmonella paratyphi C (strain RKS4594) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SALPB (Glycogen synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SALPA (Glycogen synthase OS=Salmonella paratyphi A GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SALNS (Glycogen synthase OS=Salmonella newport (strain SL254) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SALHS (Glycogen synthase OS=Salmonella heidelberg (strain SL476) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SALEP (Glycogen synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SALDC (Glycogen synthase OS=Salmonella dublin (strain CT_02021853) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
[Close]
BLAST of FC929094 vs. ExPASy Swiss-Prot
Match: GLGA_SALCH (Glycogen synthase OS=Salmonella choleraesuis GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:    9 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 341
            AD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
The following BLAST results are available for this feature:
BLAST of FC929094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
GLGA_SALSV7.025e-1337.61Glycogen synthase OS=Salmonella schwarzengrund (st... [more]
GLGA_SALPK7.025e-1337.61Glycogen synthase OS=Salmonella paratyphi A (strai... [more]
GLGA_SALPC7.025e-1337.61Glycogen synthase OS=Salmonella paratyphi C (strai... [more]
GLGA_SALPB7.025e-1337.61Glycogen synthase OS=Salmonella paratyphi B (strai... [more]
GLGA_SALPA7.025e-1337.61Glycogen synthase OS=Salmonella paratyphi A GN=glg... [more]
GLGA_SALNS7.025e-1337.61Glycogen synthase OS=Salmonella newport (strain SL... [more]
GLGA_SALHS7.025e-1337.61Glycogen synthase OS=Salmonella heidelberg (strain... [more]
GLGA_SALEP7.025e-1337.61Glycogen synthase OS=Salmonella enteritidis PT4 (s... [more]
GLGA_SALDC7.025e-1337.61Glycogen synthase OS=Salmonella dublin (strain CT_... [more]
GLGA_SALCH7.025e-1337.61Glycogen synthase OS=Salmonella choleraesuis GN=gl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1DF12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929094 ID=FC929094; Name=FC929094; organism=Citrus clementina; type=EST; length=707bp
GGCACGAGGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGT
CTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTC
CACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGA
TGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCT
GCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGC
TTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAG
GACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGT
AGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAA
TGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGA
CCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAA
ATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTT
TGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTG
TTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAA
TGAAAAAGTTCAACTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
back to top