FC929106

Overview
NameFC929106
Unique NameFC929106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9525 contig Ccv1_Contig9525:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 40/114 (35.09%), Postives = 61/114 (53.51%), Query Frame = 1
Query:   82 SNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDIL----YDSWSPAMTVSSVCISILSMLS 408
            ++RL++EL      PP G    +  D +     ++ G   T Y    F+L+V  PE YP E PQ+ FL P   HP+I S G ICLD+L      +W P++ +++V  SI  ++S
Sbjct:    4 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPI-YHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMS 116          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 41/138 (29.71%), Postives = 67/138 (48.55%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRNGRSPKETRWW 498
            R+ KE       P  G      +N  R+  + V G   + +    F+L++  PE YPM AP+V F+     HP+I   G ICLD+L D WSPA+ + ++ +SI ++LS+       A++   +       + +  R W
Sbjct:    7 RIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKI-YHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREW 143          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 44/116 (37.93%), Postives = 62/116 (53.45%), Query Frame = 1
Query:   85 NRLQKELVEWQVNPPAGF----KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDIL----YDSWSPAMTVSSVCISILSMLS 408
            +RL++EL      PP G          D+L+  II  +G+P   Y    F L++  PE YP E P++ FL P   HP+I S G ICLDIL      +W PA+ +S+V  SI  ++S
Sbjct:    5 SRLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSP---YEGGIFNLEIIVPERYPFEPPKIRFLTPI-YHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMS 116          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 37/117 (31.62%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  121 NPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--------SWSPAMTVSSVCISILSMLSSSTVKQRPADND 444
            NP   FK  V +N L  W + + G   T Y    F+ ++ FP +YP E P++ F      HP+IY +G +C+ IL+         +WSPA  + +V +S++S+ +       PA+ D
Sbjct:   16 NPSEHFKVSVNENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEM-WHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNT-DSPANVD 130          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 41/134 (30.60%), Postives = 65/134 (48.51%), Query Frame = 1
Query:   43 SSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADN 441
            S+ P++   S     RLQ EL+   +    G       DN+  W   + G+  T++    + L + F   YP ++P+V F      HP++   G+ICLDIL D WS A  V ++ +SI S+L    +   P +N
Sbjct:   25 SAPPTKTVDSHSVLKRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKF-ETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISS-PLNN 156          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 41/120 (34.17%), Postives = 61/120 (50.83%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADND 444
            R+ KE+     +PP G     T DNL+ + I + G   + Y    F L++  P+ YPM  P V FL     HP++   G ICL  L   WSPA+ + +V +SI +++ +      P DND
Sbjct:    6 RIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKI-YHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPN-PDDPLDND 123          
The following BLAST results are available for this feature:
BLAST of FC929106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UBE2T_HUMAN7.567e-1135.09Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBE2N_DROME7.567e-1129.71Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBE2T_XENLA9.883e-1137.93Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC_ASFK59.883e-1131.62Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC19_ARATH9.883e-1130.60Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBC13_SCHPO9.883e-1134.17Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929106 ID=FC929106; Name=FC929106; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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