FC929106

Overview
NameFC929106
Unique NameFC929106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9525 contig Ccv1_Contig9525:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.982e-16
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 1
Query:   28 EAMTSSSAPSRKALSK------IASNRLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPAD 438
            E  T     S+ ++SK       ++ R+QKEL +  ++PP    AG K    DN+  W   + G PG++Y    F L + F   YP + P+V F      H +I S G ICLDIL D+WSPA+T+S V +SI S+L+       PAD
Sbjct:   25 EGSTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRI-YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDC----NPAD 163          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.813e-16
Identity = 46/112 (41.07%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +AS R+ KEL + Q +PP       T D++ +W   + G   + +A   F + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+TVS V +SI S+L+
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKV-YHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLT 111          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.813e-16
Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+QKEL +   +PPA      V D+L  W   + G P + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.813e-16
Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +AS R+ KEL + Q +PP       V +++  W   + G   + YA   F + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S V +SI S+L+
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 111          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.813e-16
Identity = 55/141 (39.01%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   28 EAMTSSSAPSRKALSKIASNRLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPAD 438
            E+  S S  S+  L   ++ R+QKEL +  ++PP    AG K    DN+  W   + G PG++Y    F L + F   YP + P+V F      H +I S G ICLDIL D+WSPA+T+S V +SI S+L+       PAD
Sbjct:   33 ESKVSMSKNSK--LLSTSAKRIQKELADITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRI-YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDC----NPAD 163          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.020e-15
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +S  A  RL ++    Q +PPAG     V DN+  W   + G   T + + TF L + F E YP + PQV F+     HP++Y+ G +CLDIL + WSP   V++V  SI S+L+
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEM-FHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLN 114          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.020e-15
Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTV 420
            +S  A  RL ++    Q +PP+G     + DN+ +W   + G   T + + TF L + F E YP + PQV F+     HP++Y++G +CLDIL + WSP   VSS+  S+ S+L+   +
Sbjct:    1 MSTPARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEM-FHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNI 118          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  A  RL ++    Q +PP G     ++N + +W   + G  GT + + TF+L ++F E YP + P V FL     HP++Y++G ICLDIL + WSP   VSS+  SI S+L
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM-FHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLL 113          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  A  RL ++    Q +PP G     ++N + +W   + G  GT + + TF+L ++F E YP + P V FL     HP++Y++G ICLDIL + WSP   VSS+  SI S+L
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM-FHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLL 113          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  A  RL ++    Q +PP G     ++N + +W   + G  GT + + TF+L ++F E YP + P V FL     HP++Y++G ICLDIL + WSP   VSS+  SI S+L
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM-FHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLL 113          
The following BLAST results are available for this feature:
BLAST of FC929106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UB2E1_MOUSE5.982e-1637.41Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UBC30_ARATH7.813e-1641.07Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC2_CAEEL7.813e-1643.24Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC10_ARATH7.813e-1640.18Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UB2E1_HUMAN7.813e-1639.01Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC2_NECHA1.020e-1538.26Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_CANAL1.020e-1535.29Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBE2B_RAT1.333e-1538.60Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT1.333e-1538.60Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE1.333e-1538.60Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929106 ID=FC929106; Name=FC929106; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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