FC929106

Overview
NameFC929106
Unique NameFC929106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9525 contig Ccv1_Contig9525:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.273e-15
Identity = 47/111 (42.34%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D+L  W   + G P + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.273e-15
Identity = 43/115 (37.39%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +S  A  RL ++    Q +PPAG     V+DN+  W   + G   T + + TF+L + F E YP + P V F+     HP++Y+NG +CLDIL + WSP   V+++  SI S+L+
Sbjct:    1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTM-FHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLN 114          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.273e-15
Identity = 50/142 (35.21%), Postives = 70/142 (49.30%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRNGRSPKETRWW 498
            +A  R+ KEL +   +PP+      V ++L  W   + G   + Y+   F L + FP  YP + P+V F      HP+I SNG ICLDIL D WSPA+T+S V +SI SML+     +       +V      R     R W
Sbjct:    1 MAFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRI-YHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREW 141          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.969e-15
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   82 SNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            S RLQ EL+   + P  G       DN+  WI  + GA  T+Y    F++ + FP  YP + P V F      HP++ +NG+ICLDIL D WSP   V S+ ISI S+L
Sbjct:    8 SKRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQC-FHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLL 115          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.969e-15
Identity = 44/122 (36.07%), Postives = 64/122 (52.46%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQR 429
            +S  A  RL ++    Q +PPAG     V DN+  W   + G   T + + TF L + F E YP + P V F+     HP++Y+ G +CLDIL + WSP   V++V  SI S+L+      R
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEM-FHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSR 121          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 44/115 (38.26%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +S  A  RL ++    Q +PP G     TDN +  W   + G   T + + TF+L ++F E YP + P V F+     HP++Y++G ICLDIL + WSP   VS++  SI S+LS
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKV-FHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLS 114          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.638e-15
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  A  RL ++    Q +PPAG     + +N+  W   + G   +++   TF+L + F E YP +AP V FL     HP++Y++G ICLDIL + WSP   ++++  SI S+L
Sbjct:    1 MSTAARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKM-FHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLL 113          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.473e-14
Identity = 42/115 (36.52%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +S  A  RL ++    Q +PPAG     V DN+  W   + G   T + + TF L + F E YP + P V F+     HP++Y  G +CLDIL + WSP   V+++  SI S+L+
Sbjct:    1 MSTSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQM-FHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLN 114          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.473e-14
Identity = 42/115 (36.52%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +S  A  RL ++    Q +PPAG     V DN+  W   + G   T + + TF L + F E YP + P V F+     HP++Y  G +CLDIL + WSP   V+++  SI S+L+
Sbjct:    1 MSTSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQM-FHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLN 114          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.924e-14
Identity = 42/136 (30.88%), Postives = 68/136 (50.00%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN------LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDIL--YDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRY 450
            +S +   RLQ+E  +W+ + P GF  K   +      L  W + + G P T +    ++L + FPE YP   P+  F PP   HP++Y +G +CL IL   + W PA+T+  + + I  +L    +   PA  + Y
Sbjct:    1 MSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL-FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIAS-PAQTEAY 134          
The following BLAST results are available for this feature:
BLAST of FC929106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UBCD1_DROME2.273e-1542.34Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_SCHPO2.273e-1537.39Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC1_COLGL2.273e-1535.21Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBE2C_DICDI2.969e-1541.28Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC2_NEUCR2.969e-1536.07Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBCD6_DROME5.064e-1538.26Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_DICDI8.638e-1535.96Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC2_EMENI1.473e-1436.52Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU1.473e-1436.52Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC9_SCHPO1.924e-1430.88SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929106 ID=FC929106; Name=FC929106; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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