FC929106

Overview
NameFC929106
Unique NameFC929106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9525 contig Ccv1_Contig9525:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.599e-14
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTV 420
            +S  A  RL ++    Q + P+G     + DN+  W   + G   T + + TF L + F E YP + P V F+     HP++Y++G +CLDIL + WSP   VSS+  SI S+L+   +
Sbjct:    1 MSTPAKRRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEM-FHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNI 118          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.312e-14
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +S  A  RL ++    Q +PP G     V DN+  W   + G   T + + TF + + F E YP + P V F+     HP++YS+G +CLDIL + WSP   V+++  S+ S+L+
Sbjct:    1 MSTTARRRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQM-FHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLN 114          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--------SWSPAMTVSSVCISILSMLS 408
            + S+ L  E     VNP   FK  V  DNL  W + + G P TLY    F+ ++ FP  YP E P++ F      HP+IYS+G +C+ IL+         +WSPA  + +V +S++S+L+
Sbjct:    1 MVSSFLLAEYKNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEM-WHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLN 119          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  A  RL ++    Q +PPAG      DN +  W   + G   T +   TF+L + F E YP + P V F+     HP+IY++G ICLDIL + WSP   V+++  SI S+L
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 113          
BLAST of FC929106 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +S  A  RL ++    Q +PPAG      DN +  W   + G   T +   TF+L + F E YP + P V F+     HP+IY++G ICLDIL + WSP   V+++  SI S+L
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 113          
The following BLAST results are available for this feature:
BLAST of FC929106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UB2D2_RAT4.287e-1440.54Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_PIG4.287e-1440.54Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UB2D2_MOUSE4.287e-1440.54Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN4.287e-1440.54Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN4.287e-1440.54Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC2_DEBHA5.599e-1434.45Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_YARLI7.312e-1434.78Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC_ASFM21.629e-1335.83Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC2_ARATH1.629e-1337.72Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_ARATH1.629e-1337.72Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929106 ID=FC929106; Name=FC929106; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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