FC929110

Overview
NameFC929110
Unique NameFC929110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:20..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929110 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.700e-20
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  101 TVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEA 373
            TV+ N VVV+SKT+C +   VK LF+ L V    +ELD+  S+GS +Q+ L + TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L EA
Sbjct:   81 TVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172          
BLAST of FC929110 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.445e-20
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 2
Query:   95 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            QET+S N VV+FSKT C +C   K+LF  + V +K +ELD    G+  Q AL + TG++TVP +F+ G  IGG   T  LH EGKL+PL+
Sbjct:   61 QETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 150          
BLAST of FC929110 vs. ExPASy Swiss-Prot
Match: GLRX2_PONAB (Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.658e-19
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 2
Query:   95 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            QET+S N VV+FSKT C +C   K+LF+ + V +K +ELD    G+  Q AL + TG +TVP +F+ G  IGG   T  LH EGKL+PL+
Sbjct:   58 QETISDNCVVIFSKTSCSYCTMAKKLFRDMNVNYKVVELDLLEYGNQFQDALYKMTGGRTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 147          
BLAST of FC929110 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.829e-19
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   89 KAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGA 379
            + ++ +  N V++FSK++CP    VKELF  LGV +  +ELD+  DG+ +Q  L E + QKTVPN+F+   H+GGCD T   H  G L  LL +  A
Sbjct:  112 RLRDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQDDSA 208          
BLAST of FC929110 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.829e-19
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 2
Query:   95 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            QET+S+N VV+FSK+ C +C   K++F  + V +K +ELD    GS  Q AL + TG++TVP +F+ G  IGG   T  LH EGKL+PL+
Sbjct:   54 QETISNNCVVIFSKSSCSYCSMAKKIFHDMNVNYKVVELDMVEYGSQFQEALYKMTGERTVPRIFVNGIFIGGAADTHRLHKEGKLLPLV 143          
BLAST of FC929110 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.825e-19
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 2
Query:   95 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTE 370
            + T++ N VV++SK++C + + VK LF+++GV    IELD+  + G  +Q  L   TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L+E
Sbjct:   64 KRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATMLSE 156          
BLAST of FC929110 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.302e-19
Identity = 42/94 (44.68%), Postives = 63/94 (67.02%), Query Frame = 2
Query:   95 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAG 376
            ++T+SS+ +V+FSK++CP+C   K +F++L      +ELD+  DG  IQ+AL E  G++TVP VFI GKH+GG D T   +  G+L  LL  +G
Sbjct:   36 KKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVSG 129          
BLAST of FC929110 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.404e-18
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 2
Query:   95 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKES-DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEA 373
            ++TV+ N+VV++SKT+C +C  VK LF++LGV    +ELD+    G  +Q  L   TGQ TVPNVF+ GKHIGGC  T  L+ +G L  +L EA
Sbjct:   74 RKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 167          
BLAST of FC929110 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.968e-18
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  104 VSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTE 370
            +  + VV+FSK++CP    VKELF  LGV    +ELD+  DG+ +Q  L+E T QKTVPN+F+   H+GGCD T   +  G L  LL E
Sbjct:  174 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262          
BLAST of FC929110 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.516e-17
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 2
Query:   95 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            Q  + SN +V+FSK++CP+C+  K +F QL      +ELD+  DG  IQ  L E+ G++TVP VF+ GKHIGG D   A    G+L  LL
Sbjct:   38 QNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127          
The following BLAST results are available for this feature:
BLAST of FC929110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
GRS12_ARATH5.700e-2054.35Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GLRX2_HUMAN7.445e-2048.89Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
GLRX2_PONAB1.658e-1948.89Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=G... [more]
TRXR3_MOUSE2.829e-1943.30Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
GLRX2_RAT2.829e-1947.78Glutaredoxin-2, mitochondrial OS=Rattus norvegicus... [more]
GRS10_ORYSJ4.825e-1948.39Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
GRXC4_ARATH6.302e-1944.68Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GRXC5_ARATH1.404e-1848.94Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
TRXR3_HUMAN6.968e-1847.19Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
GRXC3_ARATH4.516e-1745.56Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DG05RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929110 ID=FC929110; Name=FC929110; organism=Citrus clementina; type=EST; length=601bp
TTTGTAAAGCCAAAGAGGATTTGAAGCTTATTTAGGGTTTGTGAGATTTC
GAATCAAAGACAAAGAAGACACAGAAATGGCTTTGCCCAAGGCCCAGGAA
ACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTT
CTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGG
CCATTGAACTGGACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTA
GCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATTGGAGGGAA
ACACATTGGTGGCTGCGATTCAACTACTGCACTGCACGGGGAAGGGAAGC
TGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAA
TGGATGGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGT
TGGTAGTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAG
TAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTG
TATGAATTTTATCAGATTTTCCATCTACTAAAAAAAAAAAAAAAAAAAAA
A
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