FC929193

Overview
NameFC929193
Unique NameFC929193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9525 contig Ccv1_Contig9525:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929193 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.172e-17
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+QKEL + Q +PPA      V D+L  W   + G P + Y    F L V FP  YP + P++ F      HP+I SNG ICLDIL   WSPA+TVS V +SI S+L
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKI-YHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLL 110          
BLAST of FC929193 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.410e-17
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   25 VEAMTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTV 420
            V A    + PS  A       RLQ+EL+   ++   G      +DNL +W+  ++GA GT+Y +  ++L ++FP  YP  AP V FL P   HP++ + G+ICLDIL D WS    V ++ +SI S+L    +
Sbjct:   13 VTAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC-YHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNI 144          
BLAST of FC929193 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.410e-17
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   25 VEAMTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTV 420
            V A    + PS  A       RLQ+EL+   ++   G      +DNL +W+  ++GA GT+Y +  ++L ++FP  YP  AP V FL P   HP++ + G+ICLDIL D WS    V ++ +SI S+L    +
Sbjct:   13 VAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC-YHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNI 144          
BLAST of FC929193 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.066e-17
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSS 414
            R+ KEL +   +PP+      V D+L  W   + G P + YA   F L + FP  YP++ P++  L     HP+I SNG+ICLDIL D WSPA+T+S V +SI S+L+ +
Sbjct:    5 RINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIA-LTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDA 113          
BLAST of FC929193 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.229e-17
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   79 ASNRLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPAD 438
            ++ R+QKEL E  ++PP    AG K    DNL  W+  + G PG++Y    F L + F   YP + P+V F      H +I S G ICLDIL D+WSPA+T+S V +SI S+L+       PAD
Sbjct:   87 SAKRIQKELAEITLDPPPNCSAGPKG---DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRI-YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDC----NPAD 202          
BLAST of FC929193 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.229e-17
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +AS R+ KEL + Q +PP+      V +++  W   + G P + YA   F + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S V +SI S+L+
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKV-YHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 111          
BLAST of FC929193 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.574e-16
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   25 VEAMTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTV 420
            V A    + PS  A       RLQ+EL+   ++   G      +DNL +W+  ++GA GT+Y +  ++L ++FP  YP  AP V FL P   HP++ + G+ICLDIL + WS    V ++ +SI S+L    +
Sbjct:   13 VAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC-YHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNI 144          
BLAST of FC929193 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.056e-16
Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 1
Query:   25 VEAMTSSSAPSRKALSKIAS-------NRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            V+   +SS  SRK      S        RLQ+EL+   ++   G      +DNL +WI  ++GA GT+Y +  ++L ++FP  YP  AP V F+ P   HP++ S+G+ICLDIL D WS    V ++ +S+ S+L
Sbjct:    6 VDPAAASSVASRKGQESGTSAARGSVGKRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPC-FHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLL 139          
BLAST of FC929193 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 1
Query:   25 VEAMTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTV 420
            V A+   + P   A       RLQ+EL+    +   G      +DNL +W+  ++GA GT+Y +  ++L ++FP  YP  AP V FL P   HP++ + G+ICLDIL D WS    V ++ +SI S+L    +
Sbjct:   13 VAAVRKGAEPCGGAARGPVGKRLQQELMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC-YHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNI 144          
BLAST of FC929193 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   79 ASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSS 414
            +S R+ KEL + + +PP       V D+L  W   + G   + YA   F L + FP  YP + P++ F      HP+I +NG+ICLDIL D WSPA+T+S V +SI S+L+ +
Sbjct:    3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKI-YHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDA 114          
The following BLAST results are available for this feature:
BLAST of FC929193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UB2D1_BOVIN3.172e-1745.05Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBE2C_MACFA5.410e-1736.09Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN5.410e-1736.09Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC4_CANAL7.066e-1741.82Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBCD2_DROME9.229e-1741.94Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC11_ARATH9.229e-1741.07Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBE2C_HUMAN1.574e-1635.34Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2C_XENLA2.056e-1637.04Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_MOUSE2.685e-1635.34Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBC4_YEAST2.685e-1639.82Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AB06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929193 ID=FC929193; Name=FC929193; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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