FC929261

Overview
NameFC929261
Unique NameFC929261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length823
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12949 contig Ccv1_Contig12949:141..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: RMLA_XANCB (Glucose-1-phosphate thymidylyltransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rmlA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 50/185 (27.03%), Postives = 85/185 (45.95%), Query Frame = 1
Query:  154 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEP-FFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD 705
            K +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ ++++      + +   L    A+ G+ I  + +  P G A    + RD +    G+P   VL  ++   +   + +    A    A++    V++P +YGV   ++  GKV    EKP+    N    G+Y  +    D
Sbjct:    5 KGIILAGGSGTRLYPITKGVSKQLLPVYDKPMIYYPLSVLMLAGIRDILIINTPHEQALFQSLLGDGAQWGVNIQYAVQPSPDGLAQAYLIGRDFV---GGKPSCLVLGDNIFHGHGLTDTLRRADAREQGATVFGYWVNDPERYGVAEFDQH-GKVIDIAEKPEKPRSNYAVTGLYFYDGKASD 185          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_STRU0 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 65/250 (26.00%), Postives = 108/250 (43.20%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVM------------------LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-------ELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIG 813
            M ALIL GG GTRL  LT ++ KP V+F  +  I+   +      G+  V +   YQP V+                  +  L+ F A  G K          GT+  +    D +     E   +L+ D I +  + EM++ HK +    ++ V  V   E S++G++ T +S  ++ +F EKP+     K + GIY+ N   L ++        +  +   K V P     G +++     G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQNIAKPAVQFGGRYRIIDFALSNCANSGIDNVGVITQYQPLVLNSHIGNGSSWGLEGINRGVTILQPFSATEGNKWF-------EGTSHAIYQNIDYIDSINPEYVLILSGDHIYKMDYEEMLQVHKDNMASLTVAVLDVPLKEASRFGIMNT-DSNDRIVEFEEKPEHPKSTKASMGIYIFNWPRLRKMLVDSENGNIDMSDFGKNVIPAYLESGERVYTYNFNGYWKDVG 246          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_STRPS (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain CGSP14) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 60/243 (24.69%), Postives = 107/243 (44.03%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPK-IALEGKLFAMVLPGFWMDIG 813
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G++ T ++  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P  + L   ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLAKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGIDSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDSVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIMNT-DANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLELGESVYAYEFSGYWKDVG 246          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_STRP4 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 60/243 (24.69%), Postives = 107/243 (44.03%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 813
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G++ T ++  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDSVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIMNT-DANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSXFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_STRGC (Glucose-1-phosphate adenylyltransferase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 60/243 (24.69%), Postives = 108/243 (44.44%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 813
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + + +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G++ T ++  ++ +F EKP+     K + GIY+ +         V ++  +  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVITQYQPLALNSHIGNGSSWGLDGINTGVSILQPYSASEGNRWFEGTSHAIFQNIDYIDSINPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIMNT-DANNRIVEFEEKPENPKSTKASMGIYIFDWQRLRNMLVVAEKSNVDMSDFGKNVIPNYLESGESVYAYEFAGYWKDVG 246          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: EI2BG_MACFA (Translation initiation factor eIF-2B subunit gamma OS=Macaca fascicularis GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 40/137 (29.20%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  154 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK 564
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ K+   I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +A+    ++++ K
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPAGNKPLIWYPLNLLERVGFEEVIVVTT--RDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYMYPKLKTDV----LVLSCDLITDVALHEVVDLFRAYDASLAMLMRK 134          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: RMLA1_SHIFL (Glucose-1-phosphate thymidylyltransferase 1 OS=Shigella flexneri GN=rmlA1 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 57/229 (24.89%), Postives = 111/229 (48.47%), Query Frame = 1
Query:  148 TMKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE-LRPTS---IEKEVFPKIAL-EGKL-FAMVLPGF-WMDIG 813
            T K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q       L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++++        A++    V++P +YGVV  +++ G      EKP+    N    G+Y  +  V++  + L+P++   +E     +I + +G+L  AM+  G+ W+D G
Sbjct:    3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKLMDTAVNRESGATVFAYHVNDPERYGVVEFDDN-GTAISLEEKPQEPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMDQGRLSVAMMGRGYAWLDTG 228          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: EI2BG_BOVIN (Translation initiation factor eIF-2B subunit gamma OS=Bos taurus GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 42/142 (29.58%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  154 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAI--NYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE 573
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++    + Q  +  +F K    K+ + I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +AH    ++++ K  E
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTKDVQKALCADFNK---MKMKLDIVCIPDEADMGTADSLRHIYQKLKTDV----LVLSCDLITDVALHEVVDLFRAHDASLAMLMRKGQE 138          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: RMLA_NEIMA (Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup A GN=rmlA1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 62/228 (27.19%), Postives = 104/228 (45.61%), Query Frame = 1
Query:  151 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLL-NPAVLDRIELRPTS---IEKEVFPKIALE-GKLFAMVL-PGF-WMDIG 813
            MK +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ ++++    +       L    +  GI I  + +  P G A    +  + + +D      VL  ++     F + ++   A    A++   +V  P ++GVV   E+   V    EKP+    +    G+Y   N AV    +L+P++   +E     ++ LE G L   +L  GF W+D G
Sbjct:    1 MKGIILAGGSGTRLYPITRGVSKQLLPVYDKPMIYYPLSVLMLAGIRDILVITAPEDNASFKRLLGDGSDFGISISYAVQPSPDGLAQAFIIGEEFIGND--NVCLVLGDNIFYGQSFTQTLKQAAAQTHGATVFAYQVKNPERFGVVEFNENFRAV-SIEEKPQRPKSDWAVTGLYFYDNRAVEFAKQLKPSARGELEISDLNRMYLEDGSLSVQILGRGFAWLDTG 225          
BLAST of FC929261 vs. ExPASy Swiss-Prot
Match: GLGC_CLOPE (Glucose-1-phosphate adenylyltransferase OS=Clostridium perfringens GN=glgC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 66/241 (27.39%), Postives = 110/241 (45.64%), Query Frame = 1
Query:  157 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQP-----EVMLNFLKEFEAK-LGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI----ELRPTS---IEKEVFPKIALEG-KLFAMVLPGFWMDIG 813
            A+IL GG G+RL  LT ++ KP V F  K  I+   +      G+  V +   Y+P      + +    + + +  G+ I+   + E       GTA  +    + +     E   +L+ D I +  + +M+E HK    +A+I V  V   E S++G++ T E    + +F EKP+       + GIY+ N  +L +     EL  +S     K + PK+   G KL A    G+W D+G
Sbjct:   13 AMILAGGQGSRLGVLTKNLAKPAVPFGGKYRIIDFPLSNCSNSGIYTVGVLTQYKPLKLNEHIGIGDTWDLDRRDGGVSILPPYQKEKGGDWYKGTANAIYQNIEFIERYDPEYVLILSGDHIYKMDYDKMLEMHKQKEADATIAVINVPMHEASRFGIMNTNEDL-SIYEFEEKPEHPKSTNASMGIYIFNWKILKKFLEEDELDQSSSNDFGKNIIPKMLNSGKKLIAYPFNGYWKDVG 252          
The following BLAST results are available for this feature:
BLAST of FC929261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RMLA_XANCB3.814e-1127.03Glucose-1-phosphate thymidylyltransferase OS=Xanth... [more]
GLGC_STRU03.814e-1126.00Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRPS3.814e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRP43.814e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRGC3.814e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
EI2BG_MACFA3.814e-1129.20Translation initiation factor eIF-2B subunit gamma... [more]
RMLA1_SHIFL4.982e-1124.89Glucose-1-phosphate thymidylyltransferase 1 OS=Shi... [more]
EI2BG_BOVIN4.982e-1129.58Translation initiation factor eIF-2B subunit gamma... [more]
RMLA_NEIMA6.506e-1127.19Glucose-1-phosphate thymidylyltransferase OS=Neiss... [more]
GLGC_CLOPE6.506e-1127.39Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DC11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929261 ID=FC929261; Name=FC929261; organism=Citrus clementina; type=EST; length=823bp
GCAAAGCAAAAGCGAAGCGCGCGAAGCTCGCCTCATCCGTTGACTGAGCT
GTCGGTCCCGAGTCACGACTCGCGACTCTTGTTTTTGAACTCAGTTGTTT
GCCGTTCGGATCCGGTCTTAATTAAAGGATAAAGCAGGCTCCGTATCACA
ATGAAGGCACTTATTCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTT
GACGCTTAGTGTCCCTAAGCCACTTGTTGAATTTGCTAACAAACCCATGA
TCCTGCATCAGATAGAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTT
TTGGCTATTAACTACCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATT
TGAAGCAAAGCTTGGGATCAAGATCATCTGCTCACAAGAGACTGAGCCAC
TGGGCACTGCTGGTCCTCTGGCTCTGGCTAGAGACAAATTGATTGACGAT
ACTGGTGAGCCATTTTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCC
ATTTGCAGAAATGATTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCA
TCATGGTAACCAAGGTGGATGAGCCATCAAAATATGGTGTGGTGGTTACG
GAAGAGTCTACTGGAAAAGTTGAGAAATTCGTTGAGAAACCTAAATTATT
TGTTGGTAACAAAATTAATGCTGGAATTTATCTTTTGAACCCTGCGGTTC
TTGATCGCATTGAGCTGAGGCCCACCTCCATTGAGAAAGAGGTCTTTCCA
AAAATTGCTTTAGAAGGAAAGCTCTTCGCGATGGTTCTTCCAGGTTTCTG
GATGGACATTGGACAGCCGAGGG
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