FC929266

Overview
NameFC929266
Unique NameFC929266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9285 contig Ccv1_Contig9285:2..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: ROCO5_DICDI (Probable serine/threonine-protein kinase roco5 OS=Dictyostelium discoideum GN=roco5 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 56/168 (33.33%), Postives = 86/168 (51.19%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALFGGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNP----KISDFGLAKLDEEEKTHISTRVAGTIG-----YMAPEYALWGYLTYKADVYSFGVVALEIVSG 479
            EF  E+ + + L HP++V + G C+  D   +V EY+ N +L   L     S   + W ++ KI + IA  +  +H  +  KI HRD+K+ N+L+  D+N     K+SDFG       E   + T   G        +++PE       T KADVYSFG+V  EI++G
Sbjct: 2220 EFRREVWLSNTLTHPSIVSLKGYCL--DPCCIVMEYIPNGTLYSHL---RKSFSSITWQLKLKIAINIADAIKHMHGFTP-KICHRDLKSPNILMLSDMNAAVVCKVSDFG-------ETRAVVTSALGRDKLSNPIWLSPEIMRGDEYTEKADVYSFGIVLWEILTG 2374          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: NTRK3_PANTR (NT-3 growth factor receptor OS=Pan troglodytes GN=NTRK3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 52/169 (30.77%), Postives = 88/169 (52.07%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSL----------AHALFGGENSQLKLNWPVRQKICLG--IARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAK-LDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEI 470
            +F  E  +++ LQH ++VK +G C +GD L++V+EYM++  L          A  L  G+  Q K    + Q + +   IA G+ +L  +     VHRD+   N L+  +L  KI DFG+++ +   +   +       I +M PE  ++   T ++DV+SFGV+  EI
Sbjct:  584 DFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEI 749          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: NTRK3_MOUSE (NT-3 growth factor receptor OS=Mus musculus GN=Ntrk3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 52/169 (30.77%), Postives = 88/169 (52.07%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSL----------AHALFGGENSQLKLNWPVRQKICLG--IARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAK-LDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEI 470
            +F  E  +++ LQH ++VK +G C +GD L++V+EYM++  L          A  L  G+  Q K    + Q + +   IA G+ +L  +     VHRD+   N L+  +L  KI DFG+++ +   +   +       I +M PE  ++   T ++DV+SFGV+  EI
Sbjct:  584 DFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEI 749          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: NTRK3_MACFA (NT-3 growth factor receptor OS=Macaca fascicularis GN=NTRK3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 52/169 (30.77%), Postives = 88/169 (52.07%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSL----------AHALFGGENSQLKLNWPVRQKICLG--IARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAK-LDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEI 470
            +F  E  +++ LQH ++VK +G C +GD L++V+EYM++  L          A  L  G+  Q K    + Q + +   IA G+ +L  +     VHRD+   N L+  +L  KI DFG+++ +   +   +       I +M PE  ++   T ++DV+SFGV+  EI
Sbjct:  584 DFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEI 749          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: NTRK3_CHICK (NT-3 growth factor receptor OS=Gallus gallus GN=NTRK3 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 52/169 (30.77%), Postives = 88/169 (52.07%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSL----------AHALFGGENSQLKLNWPVRQKICLG--IARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAK-LDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEI 470
            +F  E  +++ LQH ++VK +G C +GD L++V+EYM++  L          A  L  G+  Q K    + Q + +   IA G+ +L  +     VHRD+   N L+  +L  KI DFG+++ +   +   +       I +M PE  ++   T ++DV+SFGV+  EI
Sbjct:  586 DFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEI 751          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: EPHA4_MOUSE (Ephrin type-A receptor 4 OS=Mus musculus GN=Epha4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 51/162 (31.48%), Postives = 90/162 (55.56%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALF--GGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAG--TIGYMAPEYALWGYLTYKADVYSFGVVALEIVS 476
            +FL E +++    HPN++ + G   +   ++++ EYMEN SL   L    G  + ++L   +R     GI  G+ +L + S    VHRD+ A N+L++ +L  K+SDFG++++ E++     T   G   I + APE   +   T  +DV+S+G+V  E++S
Sbjct:  666 DFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR-----GIGSGMKYLSDMS---YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 819          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: EPHA4_HUMAN (Ephrin type-A receptor 4 OS=Homo sapiens GN=EPHA4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 51/162 (31.48%), Postives = 90/162 (55.56%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALF--GGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAG--TIGYMAPEYALWGYLTYKADVYSFGVVALEIVS 476
            +FL E +++    HPN++ + G   +   ++++ EYMEN SL   L    G  + ++L   +R     GI  G+ +L + S    VHRD+ A N+L++ +L  K+SDFG++++ E++     T   G   I + APE   +   T  +DV+S+G+V  E++S
Sbjct:  666 DFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR-----GIGSGMKYLSDMS---YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 819          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: EPHA4_CHICK (Ephrin type-A receptor 4 OS=Gallus gallus GN=EPHA4 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 51/162 (31.48%), Postives = 90/162 (55.56%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALF--GGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAG--TIGYMAPEYALWGYLTYKADVYSFGVVALEIVS 476
            +FL E +++    HPN++ + G   +   ++++ EYMEN SL   L    G  + ++L   +R     GI  G+ +L + S    VHRD+ A N+L++ +L  K+SDFG++++ E++     T   G   I + APE   +   T  +DV+S+G+V  E++S
Sbjct:  666 DFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR-----GIGSGMKYLSDMS---YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 819          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: EPA4B_XENLA (Ephrin type-A receptor 4-B OS=Xenopus laevis GN=epha4-B PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 51/162 (31.48%), Postives = 90/162 (55.56%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSLAHALF--GGENSQLKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEEKTHISTRVAG--TIGYMAPEYALWGYLTYKADVYSFGVVALEIVS 476
            +FL E +++    HPN++ + G   +   ++++ EYMEN SL   L    G  + ++L   +R     GI  G+ +L + S    VHRD+ A N+L++ +L  K+SDFG++++ E++     T   G   I + APE   +   T  +DV+S+G+V  E++S
Sbjct:  665 DFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR-----GIGSGMKYLSDMS---YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 818          
BLAST of FC929266 vs. ExPASy Swiss-Prot
Match: DDR1_PANTR (Epithelial discoidin domain-containing receptor 1 OS=Pan troglodytes GN=DDR1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 53/173 (30.64%), Postives = 91/173 (52.60%), Query Frame = 3
Query:    3 EFLYEIAMISCLQHPNLVKIHGCCVEGDQLLLVYEYMENNSL-----AHAL---------FGGENSQ-LKLNWPVRQKICLGIARGLAFLHEESRFKIVHRDIKATNVLLDRDLNPKISDFGLAK-LDEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIV 473
            +FL E+ ++S L+ PN++++ G CV+ D L ++ +YMEN  L     AH L           G+ +Q   +++P+   +   IA G+ +L   +    VHRD+   N L+  +   KI+DFG+++ L   +   +  R    I +MA E  L G  T  +DV++FGV   E++
Sbjct:  664 DFLKEVKIMSRLKDPNIIRLLGVCVQDDPLCMITDYMENGDLNQFLSAHQLEDKAAEGAPGDGQAAQGPTISYPMLLHVAAQIASGMRYL---ATLNFVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYYRVQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEVL 833          
The following BLAST results are available for this feature:
BLAST of FC929266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ROCO5_DICDI4.481e-1433.33Probable serine/threonine-protein kinase roco5 OS=... [more]
NTRK3_PANTR4.481e-1430.77NT-3 growth factor receptor OS=Pan troglodytes GN=... [more]
NTRK3_MOUSE4.481e-1430.77NT-3 growth factor receptor OS=Mus musculus GN=Ntr... [more]
NTRK3_MACFA4.481e-1430.77NT-3 growth factor receptor OS=Macaca fascicularis... [more]
NTRK3_CHICK4.481e-1430.77NT-3 growth factor receptor OS=Gallus gallus GN=NT... [more]
EPHA4_MOUSE4.481e-1431.48Ephrin type-A receptor 4 OS=Mus musculus GN=Epha4 ... [more]
EPHA4_HUMAN4.481e-1431.48Ephrin type-A receptor 4 OS=Homo sapiens GN=EPHA4 ... [more]
EPHA4_CHICK4.481e-1431.48Ephrin type-A receptor 4 OS=Gallus gallus GN=EPHA4... [more]
EPA4B_XENLA4.481e-1431.48Ephrin type-A receptor 4-B OS=Xenopus laevis GN=ep... [more]
DDR1_PANTR4.481e-1430.64Epithelial discoidin domain-containing receptor 1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929266 ID=FC929266; Name=FC929266; organism=Citrus clementina; type=EST; length=793bp
GTGAATTCTTATATGAGATAGCCATGATTTCGTGTTTGCAACACCCAAAT
CTTGTTAAAATTCATGGCTGTTGTGTTGAAGGGGATCAACTCTTGCTAGT
ATATGAATACATGGAAAACAACAGCCTTGCCCATGCTTTATTCGGTGGCG
AAAACAGTCAACTGAAATTGAACTGGCCAGTGAGGCAGAAGATCTGCCTT
GGGATAGCCAGAGGTTTAGCTTTTCTACATGAAGAATCCAGATTCAAAAT
AGTTCATAGAGACATCAAAGCTACGAATGTTCTGCTAGATAGAGATTTAA
ACCCCAAAATATCTGACTTTGGACTGGCTAAGCTTGATGAGGAGGAAAAA
ACTCACATCAGTACTCGAGTTGCTGGAACAATAGGATATATGGCACCAGA
GTACGCTCTATGGGGTTACTTGACCTACAAAGCAGATGTTTACAGTTTCG
GAGTTGTGGCTTTGGAAATCGTCAGTGGGAAGAATAATATGAGTTATGTG
CCAGACAGTAATTGCACCTGTCCTCTTGACTGGGCCTTCCATTTACACCG
AAGTGGTACGTTAATGGAGTTAGTGGATCCAAGGCTCGGATCAGAATTCA
ACAAGGTTGAAGCAGAGAGAATGATTAAAATAGCACTCTTATGCACCAAT
GCGTCACCTTCACTAAGGCCAACCATGTCTGAAGTGGTAAGCATGCTGGA
AGGATCTTCTAACATTCCGGATGTAATCCCTGAAGCCGGTGGTTTGAGTG
AAGACTTGAGGTTTAAAACTCTAAGAGAACATCCAAGAGAAAT
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