FC929268

Overview
NameFC929268
Unique NameFC929268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A3_OREMO (Sodium/potassium-transporting ATPase subunit alpha-3 OS=Oreochromis mossambicus GN=atp1a3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.456e-15
Identity = 47/140 (33.57%), Postives = 82/140 (58.57%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +       + +  + L  + +L ++L  D   A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  714 KADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLFFIIVNIPLALGTITILCIDLGTDMGSAISLAYETAESDIMKRQP---RNPCRDKLVNERLISIAYGQIGMIQAL 850          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A_ARTSF (Sodium/potassium-transporting ATPase subunit alpha-A OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 46/137 (33.58%), Postives = 81/137 (59.12%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVL 643
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ NI+K I + LT  +  L    +  +    + +  V +L ++L  D + A+++A E P     +  P   R+P+   ++   L+  A  Q+ V+
Sbjct:  702 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNIKKSIAYTLTSKIPELSPFLMYILFDLPLAIGTVTILCIDLGTDVVPAISMAYEGP-----EADPRKPRDPVKEKLVNERLISMAYGQIGVM 833          
The following BLAST results are available for this feature:
BLAST of FC929268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AT1A3_OREMO2.456e-1533.57Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A_ARTSF2.716e-1433.58Sodium/potassium-transporting ATPase subunit alpha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929268 ID=FC929268; Name=FC929268; organism=Citrus clementina; type=EST; length=805bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTAT
TGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATAT
TATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCTG
GCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTAT
TATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTC
GTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGTC
AATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTGA
TGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGATA
CCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGATG
CAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGTG
GAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTCC
TGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCNATGCC
CATTCCAACAAAGTAAAAAATACTCTGATATTCAATTCTTTTGTCCTTTG
CCAGGTTAGTAAATTATCAGGGAATACAATAATTTGTTAAGTTGAGCTTC
TGTTT
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