FC929268

Overview
NameFC929268
Unique NameFC929268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2B1_PIG (Plasma membrane calcium-transporting ATPase 1 OS=Sus scrofa GN=ATP2B1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.201e-48
Identity = 97/178 (54.49%), Postives = 132/178 (74.16%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXA--HSNKVKN-TLIFNSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDTL +LALATEPPT+ L+ R P GR +PLI+  M +N+L  A YQ+ V+  L F G++  +++S   A  H+   ++ T++FN+FVL Q+
Sbjct:  807 KADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTLASLALATEPPTESLLLRKPYGRNKPLISRTMMKNILGHAFYQLVVVFTLLFAGEKFFDIDSGRNAPLHAPPSEHYTIVFNTFVLMQL 984          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2B1_HUMAN (Plasma membrane calcium-transporting ATPase 1 OS=Homo sapiens GN=ATP2B1 PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 2.201e-48
Identity = 97/178 (54.49%), Postives = 132/178 (74.16%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXA--HSNKVKN-TLIFNSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDTL +LALATEPPT+ L+ R P GR +PLI+  M +N+L  A YQ+ V+  L F G++  +++S   A  H+   ++ T++FN+FVL Q+
Sbjct:  807 KADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTLASLALATEPPTESLLLRKPYGRNKPLISRTMMKNILGHAFYQLVVVFTLLFAGEKFFDIDSGRNAPLHAPPSEHYTIVFNTFVLMQL 984          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2B2_RAT (Plasma membrane calcium-transporting ATPase 2 OS=Rattus norvegicus GN=Atp2b2 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.754e-48
Identity = 96/178 (53.93%), Postives = 133/178 (74.72%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXA--HSNKVKN-TLIFNSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF+S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDT  +LALATEPPT+ L+ R P GR +PLI+  M +N+L  A YQ++++  L F G+++  ++S   A  HS   ++ T+IFN+FV+ Q+
Sbjct:  830 KADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTETLLLRKPYGRNKPLISRTMMKNILGHAVYQLTLIFTLLFVGEKMFQIDSGRNAPLHSPPSEHYTIIFNTFVMMQL 1007          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2B2_MOUSE (Plasma membrane calcium-transporting ATPase 2 OS=Mus musculus GN=Atp2b2 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.754e-48
Identity = 96/178 (53.93%), Postives = 133/178 (74.72%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXA--HSNKVKN-TLIFNSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF+S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDT  +LALATEPPT+ L+ R P GR +PLI+  M +N+L  A YQ++++  L F G+++  ++S   A  HS   ++ T+IFN+FV+ Q+
Sbjct:  785 KADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTETLLLRKPYGRNKPLISRTMMKNILGHAVYQLTLIFTLLFVGEKMFQIDSGRNAPLHSPPSEHYTIIFNTFVMMQL 962          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2B2_HUMAN (Plasma membrane calcium-transporting ATPase 2 OS=Homo sapiens GN=ATP2B2 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.754e-48
Identity = 96/178 (53.93%), Postives = 133/178 (74.72%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXA--HSNKVKN-TLIFNSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF+S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDT  +LALATEPPT+ L+ R P GR +PLI+  M +N+L  A YQ++++  L F G+++  ++S   A  HS   ++ T+IFN+FV+ Q+
Sbjct:  830 KADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTETLLLRKPYGRNKPLISRTMMKNILGHAVYQLALIFTLLFVGEKMFQIDSGRNAPLHSPPSEHYTIIFNTFVMMQL 1007          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2B3_RAT (Plasma membrane calcium-transporting ATPase 3 OS=Rattus norvegicus GN=Atp2b3 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.092e-47
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXA--HSNKVKN-TLIFNSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDT  +LALATEPPT+ L+ R P GR +PLI+  M +N+L  A YQ++++  L F G+   +++S   A  HS   ++ T+IFN+FV+ Q+
Sbjct:  804 KADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTESLLLRKPYGRDKPLISRTMMKNILGHAVYQLTIIFTLLFVGELFFDIDSGRNAPLHSPPSEHYTIIFNTFVMMQL 981          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2B3_HUMAN (Plasma membrane calcium-transporting ATPase 3 OS=Homo sapiens GN=ATP2B3 PE=1 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 1.092e-47
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXA--HSNKVKN-TLIFNSFVLCQV 757
            +AD+G AMGI GT+VAKE+SDII+ DDNF S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDT  +LALATEPPT+ L+ R P GR +PLI+  M +N+L  A YQ++++  L F G+   +++S   A  HS   ++ T+IFN+FV+ Q+
Sbjct:  804 KADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTESLLLRKPYGRDKPLISRTMMKNILGHAVYQLAIIFTLLFVGELFFDIDSGRNAPLHSPPSEHYTIIFNTFVMMQL 981          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2B1_RABIT (Plasma membrane calcium-transporting ATPase 1 OS=Oryctolagus cuniculus GN=ATP2B1 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.022e-45
Identity = 95/178 (53.37%), Postives = 128/178 (71.91%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXA--HSNKVKN-TLIFNSFVLCQV 757
            +AD G AMGI GT+VAKE+SDII+ DDNF S+VK V WGR+VY +I KF+QFQLTVNV A+++ F  A  + D PL AVQ+LWVNLIMDTL +LALATEPPT+ L+   P GR +PLI+  M +N+L  A YQ+ V+  L   G++  +++S   A  H+   ++ T++FN FVL Q+
Sbjct:  807 KADGGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTLASLALATEPPTESLLLGKPYGRNKPLISRTMMKNILGHAFYQLVVVFTLLLAGEKFFDIDSGRNAPLHAPPSEHYTIVFNIFVLMQL 984          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ATC1_DICDI (Calcium-transporting ATPase PAT1 OS=Dictyostelium discoideum GN=patA PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 6.203e-43
Identity = 95/203 (46.80%), Postives = 127/203 (62.56%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDV------------------------PLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXAHSNKVKN-----TLIFNSFVLCQV 757
            A++G +MGI GTEVA  +SD+++LDDNFAS+V+ V WGR++Y  I KF+QFQLTVNV A+ + F+  ++S  V                        PL AVQLLWVNLIMDTL ALALATEPPT  L++R P G+  PLIT  MW+N++ QA+ Q+++L  + +QG  I        AH   +KN     TL+FN FV  Q+
Sbjct:  689 ANVGFSMGISGTEVAIAASDVVLLDDNFASIVRAVLWGRNIYDAICKFLQFQLTVNVVAVTVAFIGTLTSDVVEDKDNSSSSGSADKVTEEEPRQGSPLTAVQLLWVNLIMDTLAALALATEPPTPELLERPPNGKNAPLITRSMWKNIIGQAALQLAILFTILYQGHNIFQ-HFVPQAHGPIIKNGLHHYTLVFNCFVFLQL 890          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ATC2_SCHPO (Calcium-transporting ATPase 2 OS=Schizosaccharomyces pombe GN=pmc1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.858e-42
Identity = 87/177 (49.15%), Postives = 126/177 (71.19%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVP--LNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXAHSNKVKNTLIFNSFVLCQV 757
            +A++G +MG  GTEVAKE+SDII++DDNF+S+VK + WGR+V   ++KF+QFQ+TVN+ A+ +  ++AV+S D    L AVQLLWVNLIMDTL ALALAT+PPT  +++R P      L T  MW+ ++ Q+ YQ++V LVL+F G  I +  S++        NT++FN+FV  Q+
Sbjct:  891 KANVGFSMGKSGTEVAKEASDIILMDDNFSSIVKAIAWGRTVNDAVKKFLQFQITVNITAVFLTIISAVASTDQSSVLTAVQLLWVNLIMDTLAALALATDPPTPEVLKRKPEKPGASLFTFDMWKMIICQSMYQLAVTLVLHFAGNSIFHYPSNTAD-----MNTIVFNTFVWLQL 1062          
The following BLAST results are available for this feature:
BLAST of FC929268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AT2B1_PIG2.201e-4854.49Plasma membrane calcium-transporting ATPase 1 OS=S... [more]
AT2B1_HUMAN2.201e-4854.49Plasma membrane calcium-transporting ATPase 1 OS=H... [more]
AT2B2_RAT3.754e-4853.93Plasma membrane calcium-transporting ATPase 2 OS=R... [more]
AT2B2_MOUSE3.754e-4853.93Plasma membrane calcium-transporting ATPase 2 OS=M... [more]
AT2B2_HUMAN3.754e-4853.93Plasma membrane calcium-transporting ATPase 2 OS=H... [more]
AT2B3_RAT1.092e-4753.93Plasma membrane calcium-transporting ATPase 3 OS=R... [more]
AT2B3_HUMAN1.092e-4753.93Plasma membrane calcium-transporting ATPase 3 OS=H... [more]
AT2B1_RABIT1.022e-4553.37Plasma membrane calcium-transporting ATPase 1 OS=O... [more]
ATC1_DICDI6.203e-4346.80Calcium-transporting ATPase PAT1 OS=Dictyostelium ... [more]
ATC2_SCHPO6.858e-4249.15Calcium-transporting ATPase 2 OS=Schizosaccharomyc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2AF07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929268 ID=FC929268; Name=FC929268; organism=Citrus clementina; type=EST; length=805bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTAT
TGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATAT
TATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCTG
GCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTAT
TATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTC
GTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGTC
AATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTGA
TGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGATA
CCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGATG
CAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGTG
GAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTCC
TGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCNATGCC
CATTCCAACAAAGTAAAAAATACTCTGATATTCAATTCTTTTGTCCTTTG
CCAGGTTAGTAAATTATCAGGGAATACAATAATTTGTTAAGTTGAGCTTC
TGTTT
back to top