FC929268

Overview
NameFC929268
Unique NameFC929268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2C1_HUMAN (Calcium-transporting ATPase type 2C member 1 OS=Homo sapiens GN=ATP2C1 PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 4.621e-22
Identity = 47/129 (36.43%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQA 622
            ADIG+AMG  GT+V KE++D+I++DD+F +++  +  G+ +Y NI+ F++FQL+ ++AAL +  +A + +   PLNA+Q+LW+N+IMD   A +L  EP    ++++ P   ++ ++T  +   +L+ +
Sbjct:  655 ADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSS 783          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2C1_BOVIN (Calcium-transporting ATPase type 2C member 1 OS=Bos taurus GN=ATP2C1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.621e-22
Identity = 47/129 (36.43%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQA 622
            ADIG+AMG  GT+V KE++D+I++DD+F +++  +  G+ +Y NI+ F++FQL+ ++AAL +  +A + +   PLNA+Q+LW+N+IMD   A +L  EP    ++++ P   ++ ++T  +   +L+ +
Sbjct:  689 ADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSS 817          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ATC1_YEAST (Calcium-transporting ATPase 1 OS=Saccharomyces cerevisiae GN=PMR1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.036e-22
Identity = 49/130 (37.69%), Postives = 88/130 (67.69%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQAS 625
            +DIG++MG  GT+VAKE+SD+++ DD+F++++  +  G+ ++ NIQ F+ FQL+ +VAAL +  ++       PLNA+Q+LW+N++MD   A +L  EP    +M++ P  R + ++T+ + + LL  A+
Sbjct:  691 SDIGVSMGRIGTDVAKEASDMVLTDDDFSTILTAIEEGKGIFNNIQNFLTFQLSTSVAALSLVALSTAFKLPNPLNAMQILWINILMDGPPAQSLGVEPVDHEVMKKPPRKRTDKILTHDVMKRLLTTAA 820          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2C2_RAT (Calcium-transporting ATPase type 2C member 2 OS=Rattus norvegicus GN=Atp2c2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.036e-22
Identity = 49/130 (37.69%), Postives = 89/130 (68.46%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQAS 625
            ADIG+AMG  GT+V+KE++D+I++DD+F++++  V  G+ ++ NI+ F++FQL+ ++AAL +  ++ V +   PLNA+Q+LWVN+IMD   A +L  EP     ++R P   ++ ++   +   +L+ A+
Sbjct:  683 ADIGIAMGQTGTDVSKEAADMILVDDDFSAIMSAVEEGKGIFYNIKNFVRFQLSTSIAALSLITLSTVCNLPNPLNAMQILWVNIIMDGPPAQSLGVEPVDRDALKRPPRSVKDTILNRALILKILMSAA 812          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ECA4_ARATH (Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.345e-21
Identity = 55/128 (42.97%), Postives = 83/128 (64.84%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITN-IMWRNLLI 616
            ADIG+AMGI GTEVAKE+SD+++ DDNF+++V  V  GRS+Y N++ FI++ ++ N+  +   F+ A       +  VQLLWVNL+ D   A AL   PP   +M++ P    + LIT  I++R ++I
Sbjct:  742 ADIGVAMGISGTEVAKEASDLVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLITAWILFRYMVI 869          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ECA1_ARATH (Calcium-transporting ATPase 1, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA1 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.756e-21
Identity = 55/128 (42.97%), Postives = 83/128 (64.84%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITN-IMWRNLLI 616
            ADIG+AMGI GTEVAKE+SD+++ DDNF+++V  V  GRS+Y N++ FI++ ++ N+  +   F+ A       +  VQLLWVNL+ D   A AL   PP   +M++ P    + LIT  I++R ++I
Sbjct:  742 ADIGVAMGISGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLITAWILFRYMVI 869          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2C2_HUMAN (Calcium-transporting ATPase type 2C member 2 OS=Homo sapiens GN=ATP2C2 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.996e-21
Identity = 48/139 (34.53%), Postives = 93/139 (66.91%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            ADIG+AMG  GT+V+KE++++I++DD+F++++  V  G+ ++ NI+ F++FQL+ +++AL +  ++ V +   PLNA+Q+LW+N+IMD   A +L  EP      ++ P   R+ +++  +   +L+ A+  +S  L +
Sbjct:  685 ADIGIAMGQTGTDVSKEAANMILVDDDFSAIMNAVEEGKGIFYNIKNFVRFQLSTSISALSLITLSTVFNLPSPLNAMQILWINIIMDGPPAQSLGVEPVDKDAFRQPPRSVRDTILSRALILKILMSAAIIISGTLFI 823          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2C2_MOUSE (Calcium-transporting ATPase type 2C member 2 OS=Mus musculus GN=Atp2c2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.110e-21
Identity = 55/170 (32.35%), Postives = 101/170 (59.41%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXAHSNKVKNTLIFNSFV 745
            ADIG+AMG  GT+V+KE++++I++DD+F++++  V  G+ ++ NI+ F++FQL+ ++AAL +  ++ V +   PLNA+Q+LWVN+IMD   A +L  EP     ++R P    + ++   +   +L+ A+  +   L + ++       E  +   S     T+ F  FV
Sbjct:  683 ADIGIAMGQTGTDVSKEAANMILVDDDFSAIMSAVEEGKGIFYNIKNFVRFQLSTSIAALSLITLSTVCNLPSPLNAMQILWVNIIMDGPPAQSLGVEPVDRDALRRPPRSVGDTILNRALILRVLMSAAVIIGGTLFIFWR-------EIPANGTSTPRTTTMAFTCFV 845          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ATA1_SYNY3 (Cation-transporting ATPase pma1 OS=Synechocystis sp. (strain PCC 6803) GN=pma1 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.716e-21
Identity = 52/128 (40.62%), Postives = 83/128 (64.84%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLI 616
            +ADIG+AMG  GTEVA+ESSD+++ DDNFAS+   V  GR+VY N++K I F L VN    +   ++ + + ++P+ ++Q+LW+N+I      + LA E  +  +MQ++P    EPLIT  +   +L+
Sbjct:  653 RADIGIAMGKGGTEVARESSDMLLTDDNFASIEAAVEEGRTVYQNLRKAIAFLLPVNGGESMTILISVLLALNLPILSLQVLWLNMINSITMTVPLAFEAKSPGIMQQAPRNPNEPLITKKLLHRILL 780          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ATC_TRYBB (Probable calcium-transporting ATPase OS=Trypanosoma brucei brucei GN=TBA1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 52/132 (39.39%), Postives = 82/132 (62.12%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASY 628
            +ADIG+AMG  GTEVAK +S +++ DDNFA+VVK V+ GR++Y N ++FI++ ++ N+  +V   V  +      L+ VQLLWVNL+ D L A AL    P   +M++ P    EP++   ++   ++   Y
Sbjct:  712 KADIGIAMG-SGTEVAKSASKMVLADDNFATVVKAVQEGRAIYNNTKQFIRYLISSNIGEVVCILVTGLFGLPEALSPVQLLWVNLVTDGLPATALGFNAPDRDIMEQRPRRMEEPIVNGWLFMRYMVIGVY 842          
The following BLAST results are available for this feature:
BLAST of FC929268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AT2C1_HUMAN4.621e-2236.43Calcium-transporting ATPase type 2C member 1 OS=Ho... [more]
AT2C1_BOVIN4.621e-2236.43Calcium-transporting ATPase type 2C member 1 OS=Bo... [more]
ATC1_YEAST6.036e-2237.69Calcium-transporting ATPase 1 OS=Saccharomyces cer... [more]
AT2C2_RAT6.036e-2237.69Calcium-transporting ATPase type 2C member 2 OS=Ra... [more]
ECA4_ARATH1.345e-2142.97Calcium-transporting ATPase 4, endoplasmic reticul... [more]
ECA1_ARATH1.756e-2142.97Calcium-transporting ATPase 1, endoplasmic reticul... [more]
AT2C2_HUMAN2.996e-2134.53Calcium-transporting ATPase type 2C member 2 OS=Ho... [more]
AT2C2_MOUSE5.110e-2132.35Calcium-transporting ATPase type 2C member 2 OS=Mu... [more]
ATA1_SYNY38.716e-2140.63Cation-transporting ATPase pma1 OS=Synechocystis s... [more]
ATC_TRYBB1.138e-2039.39Probable calcium-transporting ATPase OS=Trypanosom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929268 ID=FC929268; Name=FC929268; organism=Citrus clementina; type=EST; length=805bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTAT
TGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATAT
TATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCTG
GCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTAT
TATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTC
GTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGTC
AATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTGA
TGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGATA
CCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGATG
CAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGTG
GAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTCC
TGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCNATGCC
CATTCCAACAAAGTAAAAAATACTCTGATATTCAATTCTTTTGTCCTTTG
CCAGGTTAGTAAATTATCAGGGAATACAATAATTTGTTAAGTTGAGCTTC
TGTTT
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