FC929268

Overview
NameFC929268
Unique NameFC929268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT2A2_CANFA (Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Canis familiaris GN=ATP2A2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.378e-20
Identity = 52/132 (39.39%), Postives = 82/132 (62.12%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASY 628
            +++IG+AMG  GT VAK +S++++ DDNF+++V  V  GR++Y N+++FI++ ++ NV  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M + P   +EPLI+  ++   L    Y
Sbjct:  712 KSEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGFPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMNKPPRNPKEPLISGWLFFRYLAIGCY 842          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ECA3_ARATH (Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA3 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.259e-19
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASY 628
            +ADIG+AMG  GT VAK +SD+++ DDNFAS+V  V  GR++Y N ++FI++ ++ N+  +V  FVAAV      L  VQLLWVNL+ D L A A+        +M+  P    E ++T  ++   L+   Y
Sbjct:  702 KADIGIAMG-SGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVGEAVVTGWLFFRYLVIGVY 832          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A4_MOUSE (Sodium/potassium-transporting ATPase subunit alpha-4 OS=Mus musculus GN=Atp1a4 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.158e-19
Identity = 51/140 (36.43%), Postives = 87/140 (62.14%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  + S  +PL  + +L ++L  D + A++LA E P   +M+R P   R P   N++   L+  A  Q+ ++  L
Sbjct:  736 KADIGIAMGITGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIILSIPLPLGTITILCIDLGTDMVPAISLAYESPESDIMKRLP---RNPKTDNLVNNRLIGMAYGQIGMIQAL 872          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ATC1_DUNBI (Cation-transporting ATPase CA1 OS=Dunaliella bioculata GN=CA1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.065e-18
Identity = 54/143 (37.76%), Postives = 85/143 (59.44%), Query Frame = 2
Query:  230 VQADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNF 658
            ++ADIG+AMG  GT VAK ++D+++ DDNFA++V  V  GR ++ N ++FI++ ++ N+  +V  F+AA+      L  VQLLWVNL+ D L A AL        +M R P    +P++   ++   LI   Y V ++ V  F
Sbjct:  727 LRADIGIAMG-SGTAVAKHAADMVLGDDNFATIVFAVAEGRVIFNNTKQFIRYMISSNIGEVVAIFLAALLGLPEVLTPVQLLWVNLVTDGLPATALGFNRADKDMMARGPRRVDDPIVNGWLFLRYLIIGMY-VGIVTVYGF 867          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A4_RAT (Sodium/potassium-transporting ATPase subunit alpha-4 OS=Rattus norvegicus GN=Atp1a4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.065e-18
Identity = 52/140 (37.14%), Postives = 87/140 (62.14%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  V S  +PL  + +L ++L  D + A++LA E P   +M+R P   R P   N++   L+  A  Q+ ++  L
Sbjct:  732 KADIGIAMGITGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIVLSIPLPLGTITILCIDLGTDMVPAISLAYETPESDIMKRLP---RNPKTDNLVNDRLIGMAYGQIGMIQAL 868          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ATC_ARTSF (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.817e-18
Identity = 50/132 (37.88%), Postives = 81/132 (61.36%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASY 628
            +A+IG+AMG  GT VAK ++++++ DDNF+++V  V  GR++Y N+++FI++ ++ N+  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M + P    E LIT  ++   +   +Y
Sbjct:  717 KAEIGIAMG-SGTAVAKSAAEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMNKPPRRADEGLITGWLFFRYMAIGTY 847          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ATC1_DROME (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Drosophila melanogaster GN=Ca-P60A PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.817e-18
Identity = 49/119 (41.18%), Postives = 77/119 (64.71%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLIT 589
            +A+IG+AMG  GT VAK ++++++ DDNF+S+V  V  GR++Y N+++FI++ ++ N+  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M++ P    E LI+
Sbjct:  713 KAEIGIAMG-SGTAVAKSAAEMVLADDNFSSIVSAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPRKADEGLIS 830          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ATC1_DROPS (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Drosophila pseudoobscura pseudoobscura GN=Ca-P60A PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.100e-18
Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLIT 589
            +A+IG+AMG  GT VAK ++++++ DDNF+S+V  V  GR++Y N+++FI++ ++ N+  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M + P    E LI+
Sbjct:  713 KAEIGIAMG-SGTAVAKSAAEMVLADDNFSSIVSAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLIS 830          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: ATC1_ANOGA (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Anopheles gambiae GN=Ca-P60A PE=3 SV=5)

HSP 1 Score: 92.0485 bits (227), Expect = 4.049e-18
Identity = 50/132 (37.88%), Postives = 80/132 (60.61%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASY 628
            +A+IG+AMG  GT VAK ++++++ DDNF+S+V  V  GR++Y N+++FI++ ++ N+  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M + P    E LI+  ++   +    Y
Sbjct:  712 KAEIGIAMG-SGTAVAKSAAEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMTKPPRKADEGLISGWLFFRYMAIGGY 842          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: CTPF_MYCTU (Probable cation-transporting ATPase F OS=Mycobacterium tuberculosis GN=ctpF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.288e-18
Identity = 58/174 (33.33%), Postives = 92/174 (52.87%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXAHSNKVKNTLIFNSFVLCQ 754
            QA+IG+AMG  GTEVAK+++D+++ DD+FA++   V  GR V+ N+ KFI + L  N+   ++   A      +P+   Q+LW+N+       L LA EP    +M R P    +PL+T  + R  L+     VS LLV +        L++ +  H  +   T   N FV+ +
Sbjct:  653 QANIGVAMGRGGTEVAKDAADMVLTDDDFATIEAAVEEGRGVFDNLTKFITWTLPTNLGEGLVILAAIAVGVALPILPTQILWINMTTAIALGLMLAFEPKEAGIMTRPPRDPDQPLLTGWLVRRTLL-----VSTLLVASAWWLFAWELDNGAGLHEAR---TAALNLFVVVE 818          
The following BLAST results are available for this feature:
BLAST of FC929268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AT2A2_CANFA7.378e-2039.39Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
ECA3_ARATH1.259e-1940.91Calcium-transporting ATPase 3, endoplasmic reticul... [more]
AT1A4_MOUSE8.158e-1936.43Sodium/potassium-transporting ATPase subunit alpha... [more]
ATC1_DUNBI1.065e-1837.76Cation-transporting ATPase CA1 OS=Dunaliella biocu... [more]
AT1A4_RAT1.065e-1837.14Sodium/potassium-transporting ATPase subunit alpha... [more]
ATC_ARTSF1.817e-1837.88Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]
ATC1_DROME1.817e-1841.18Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]
ATC1_DROPS3.100e-1841.18Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]
ATC1_ANOGA4.049e-1837.88Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]
CTPF_MYCTU5.288e-1833.33Probable cation-transporting ATPase F OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929268 ID=FC929268; Name=FC929268; organism=Citrus clementina; type=EST; length=805bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTAT
TGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATAT
TATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCTG
GCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTAT
TATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTC
GTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGTC
AATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTGA
TGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGATA
CCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGATG
CAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGTG
GAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTCC
TGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCNATGCC
CATTCCAACAAAGTAAAAAATACTCTGATATTCAATTCTTTTGTCCTTTG
CCAGGTTAGTAAATTATCAGGGAATACAATAATTTGTTAAGTTGAGCTTC
TGTTT
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