FC929268

Overview
NameFC929268
Unique NameFC929268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: CTPF_MYCBO (Probable cation-transporting ATPase F OS=Mycobacterium bovis GN=ctpF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.288e-18
Identity = 58/174 (33.33%), Postives = 92/174 (52.87%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSXAHSNKVKNTLIFNSFVLCQ 754
            QA+IG+AMG  GTEVAK+++D+++ DD+FA++   V  GR V+ N+ KFI + L  N+   ++   A      +P+   Q+LW+N+       L LA EP    +M R P    +PL+T  + R  L+     VS LLV +        L++ +  H  +   T   N FV+ +
Sbjct:  653 QANIGVAMGRGGTEVAKDAADMVLTDDDFATIEAAVEEGRGVFDNLTKFITWTLPTNLGEGLVILAAIAVGVALPILPTQILWINMTTAIALGLMLAFEPKEAGIMTRPPRDPDQPLLTGWLVRRTLL-----VSTLLVASAWWLFAWELDNGAGLHEAR---TAALNLFVVVE 818          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A_TORCA (Sodium/potassium-transporting ATPase subunit alpha OS=Torpedo californica PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.288e-18
Identity = 50/140 (35.71%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    V  +++  +PL  V +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  726 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIANVPLPLGTVTILCIDLGTDMVPAISLAYERAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 862          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A1_XENLA (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Xenopus laevis GN=atp1a1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.288e-18
Identity = 49/140 (35.00%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  729 KADIGIAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 865          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A1_SHEEP (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Ovis aries GN=ATP1A1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18
Identity = 49/140 (35.00%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  725 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPQTDKLVNERLISMAYGQIGMIQAL 861          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A1_RABIT (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Oryctolagus cuniculus GN=ATP1A1 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18
Identity = 49/140 (35.00%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  727 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 863          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A1_PIG (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Sus scrofa GN=ATP1A1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18
Identity = 49/140 (35.00%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  725 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNEQLISMAYGQIGMIQAL 861          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A1_HUMAN (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens GN=ATP1A1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18
Identity = 49/140 (35.00%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  727 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 863          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A1_HORSE (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Equus caballus GN=ATP1A1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18
Identity = 49/140 (35.00%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  725 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPQTDKLVNERLISMAYGQIGMIQAL 861          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A1_BOVIN (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Bos taurus GN=ATP1A1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18
Identity = 49/140 (35.00%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  725 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPQTDKLVNERLISMAYGQIGMIQAL 861          
BLAST of FC929268 vs. ExPASy Swiss-Prot
Match: AT1A2_CHICK (Sodium/potassium-transporting ATPase subunit alpha-2 OS=Gallus gallus GN=ATP1A2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.019e-18
Identity = 49/140 (35.00%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  721 KADIGIAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQP---RNPRTDKLVNERLISMAYGQIGMIQAL 857          
The following BLAST results are available for this feature:
BLAST of FC929268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
CTPF_MYCBO5.288e-1833.33Probable cation-transporting ATPase F OS=Mycobacte... [more]
AT1A_TORCA5.288e-1835.71Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_XENLA5.288e-1835.00Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_SHEEP6.906e-1835.00Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_RABIT6.906e-1835.00Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_PIG6.906e-1835.00Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_HUMAN6.906e-1835.00Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_HORSE6.906e-1835.00Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_BOVIN6.906e-1835.00Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A2_CHICK9.019e-1835.00Sodium/potassium-transporting ATPase subunit alpha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929268 ID=FC929268; Name=FC929268; organism=Citrus clementina; type=EST; length=805bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTAT
TGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATAT
TATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCTG
GCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTAT
TATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTC
GTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGTC
AATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTGA
TGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGATA
CCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGATG
CAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGTG
GAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTCC
TGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCNATGCC
CATTCCAACAAAGTAAAAAATACTCTGATATTCAATTCTTTTGTCCTTTG
CCAGGTTAGTAAATTATCAGGGAATACAATAATTTGTTAAGTTGAGCTTC
TGTTT
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