FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ACTPJ (Asparaginyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=asnS PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.837e-60
Identity = 114/192 (59.38%), Postives = 140/192 (72.92%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DDM+F AK+ DK  I RL    ++PF ++ YT          K GK FE  V WGIDL+SEHER+L E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLR++GTV HSGFGLGFER+I++ TG+ NIR+VIPFPR P  A+
Sbjct:  278 VLEERKDDMQFFAKHIDKDVITRLENFIASPFAQVDYTDAIEILL---KSGKEFEFPVSWGIDLSSEHERFLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDTRMVEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYVTGLQNIREVIPFPRAPRNAN 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SYNP2 (Asparaginyl-tRNA synthetase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=asnS PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.285e-59
Identity = 116/193 (60.10%), Postives = 137/193 (70.98%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++L+ C +DMEF  K  D S +   + +    F RITYT          K  K FE  VEWGIDL SEHERYL E  F+KP+IV NYPK IKAFYMRLNDD KTVAAMDVL PK+GE+IGGSQREER DV++ RI++M +      WYLDLRRFGTV H+GFGLGFER++ F TG+ NIRDVIPFPR P  A+
Sbjct:  270 YVLEACPEDMEFFNKRIDNSVLATAQNIIENEFARITYTEAIALLE---KSNKTFEFPVEWGIDLQSEHERYLAEDLFKKPLIVSNYPKDIKAFYMRLNDDQKTVAAMDVLAPKIGEIIGGSQREERLDVLERRIQEMNIEAADLWWYLDLRRFGTVPHAGFGLGFERLVQFMTGMGNIRDVIPFPRTPLNAE 459          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ACTP7 (Asparaginyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=asnS PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.285e-59
Identity = 114/192 (59.38%), Postives = 139/192 (72.40%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DDM+F AK+ DK  I RL    + PF ++ YT          K GK FE  V WGIDL+SEHER+L E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLR++GTV HSGFGLGFER+I++ TG+ NIR+VIPFPR P  A+
Sbjct:  278 VLEERKDDMQFFAKHIDKDVITRLENFIAAPFAQVDYTDAIEILL---KSGKEFEFPVSWGIDLSSEHERFLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDTRMVEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYVTGLQNIREVIPFPRAPRNAN 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ACTP2 (Asparaginyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=asnS PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.285e-59
Identity = 114/192 (59.38%), Postives = 139/192 (72.40%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DDM+F AK+ DK  I RL    + PF ++ YT          K GK FE  V WGIDL+SEHER+L E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLR++GTV HSGFGLGFER+I++ TG+ NIR+VIPFPR P  A+
Sbjct:  278 VLEERKDDMQFFAKHIDKDVITRLENFIAAPFAQVDYTDAIEILL---KSGKEFEFPVSWGIDLSSEHERFLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDTRMVEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYVTGLQNIREVIPFPRAPRNAN 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SALTY (Asparaginyl-tRNA synthetase OS=Salmonella typhimurium GN=asnS PE=3 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.862e-59
Identity = 114/191 (59.69%), Postives = 136/191 (71.20%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  I RL    ST F ++ YT            GK FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAIARLERFVSTDFAQVDYTDAVAILERC---GKTFENPVFWGVDLSSEHERYLAEEHFKAPVVVKNYPKEIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SALTI (Asparaginyl-tRNA synthetase OS=Salmonella typhi GN=asnS PE=3 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 2.862e-59
Identity = 114/191 (59.69%), Postives = 136/191 (71.20%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  I RL    ST F ++ YT            GK FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAIARLERFVSTDFAQVDYTDAVAILERC---GKTFENPVFWGVDLSSEHERYLAEEHFKAPVVVKNYPKEIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SALPA (Asparaginyl-tRNA synthetase OS=Salmonella paratyphi A GN=asnS PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.862e-59
Identity = 114/191 (59.69%), Postives = 136/191 (71.20%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  I RL    ST F ++ YT            GK FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAIARLERFVSTDFAQVDYTDAVAILERC---GKTFENPVFWGVDLSSEHERYLAEEHFKAPVVVKNYPKEIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SALCH (Asparaginyl-tRNA synthetase OS=Salmonella choleraesuis GN=asnS PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.862e-59
Identity = 114/191 (59.69%), Postives = 136/191 (71.20%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  I RL    ST F ++ YT            GK FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAIARLERFVSTDFAQVDYTEAVAILERC---GKTFENPVFWGVDLSSEHERYLAEEHFKAPVVVKNYPKEIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_KLEP7 (Asparaginyl-tRNA synthetase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=asnS PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.862e-59
Identity = 112/191 (58.64%), Postives = 137/191 (71.73%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  I+RL+   +  F ++ YT            GK FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMQFFAERVDKDAIDRLQRFITADFAQVDYTDAVTILENC---GKQFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SODGM (Asparaginyl-tRNA synthetase OS=Sodalis glossinidius (strain morsitans) GN=asnS PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.738e-59
Identity = 112/186 (60.22%), Postives = 134/186 (72.04%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            DDM+F A+  DK  INRL+   S  F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+NDD KTVAAMDVL P +GE+IGGSQREER D +  R+ +MGL  + Y WY DLRR+GTV HSGFGLGFER+I++ TG+ NIRDVIPFPR P  A+
Sbjct:  283 DDMQFFAERIDKEAINRLKQFISADFAQVDYTKAVEILQNC---GQTFENPVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGSQREERLDRLDQRLAEMGLNKDDYWWYRDLRRYGTVPHSGFGLGFERLIVYVTGMQNIRDVIPFPRSPRNAN 465          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_ACTPJ9.837e-6059.38Asparaginyl-tRNA synthetase OS=Actinobacillus pleu... [more]
SYN_SYNP21.285e-5960.10Asparaginyl-tRNA synthetase OS=Synechococcus sp. (... [more]
SYN_ACTP71.285e-5959.38Asparaginyl-tRNA synthetase OS=Actinobacillus pleu... [more]
SYN_ACTP21.285e-5959.38Asparaginyl-tRNA synthetase OS=Actinobacillus pleu... [more]
SYN_SALTY2.862e-5959.69Asparaginyl-tRNA synthetase OS=Salmonella typhimur... [more]
SYN_SALTI2.862e-5959.69Asparaginyl-tRNA synthetase OS=Salmonella typhi GN... [more]
SYN_SALPA2.862e-5959.69Asparaginyl-tRNA synthetase OS=Salmonella paratyph... [more]
SYN_SALCH2.862e-5959.69Asparaginyl-tRNA synthetase OS=Salmonella cholerae... [more]
SYN_KLEP72.862e-5958.64Asparaginyl-tRNA synthetase OS=Klebsiella pneumoni... [more]
SYN_SODGM3.738e-5960.22Asparaginyl-tRNA synthetase OS=Sodalis glossinidiu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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