FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYD_METST (Aspartyl-tRNA synthetase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=aspS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.539e-12
Identity = 45/131 (34.35%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  177 KVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            ++ +G DL    E+ L E        +  +P  IK FY+  N DD +   A D++   + EL  G+QR   YD++ S+IE   L  + +E YL   ++G   HSG+G+G +R+ +  TG  NIR+ + FPR
Sbjct:  304 EMNYGEDLNRAAEKVLGET-MGSYYFITEWPTAIKPFYVMPNSDDAEKSTAFDLMYRDL-ELSSGAQRIHDYDLLYSQIEAKDLNPDSFEKYLQAFKYGMPPHSGWGMGADRLTMVITGAKNIRETVLFPR 432          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYD_METLZ (Aspartyl-tRNA synthetase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=aspS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.539e-12
Identity = 53/188 (28.19%), Postives = 91/188 (48.40%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFY-MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            ++ DHC D +  +     K        V + PF RITY           +        + +G DL++  ER + E K      +  +P   + FY M   D  +   A D++ P++ EL  G+QR   + ++  +I+  GL  + +E+YL+  R+G   H+G+GLG ER+++    + NIR+ + FPR
Sbjct:  252 YVADHCGDALATLGITDFK--------VPTVPFPRITYKEAIEISTAGGEP-------LVFGDDLSTAAERIVGE-KMGTMYFITEWPTSTRPFYTMPFEDRPEVCRAFDMMHPRM-ELTSGAQRCHIHSLLVEQIKAKGLNPDAFEFYLNPFRYGMPPHAGWGLGAERLVMTMLDLQNIREAVLFPR 422          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYD_ARCFU (Aspartyl-tRNA synthetase OS=Archaeoglobus fulgidus GN=aspS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 46/160 (28.75%), Postives = 78/160 (48.75%), Query Frame = 3
Query:   87 VASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +   PF RITY           +E       + WG DL++   + + E +      + ++P   K FY    +D   ++    L+    EL  G+QR   YD++   I+  G+  E + +YL+  R+G   H+G+GLG ER+I+   G+ N+R+ + FPR
Sbjct:  272 IPELPFPRITYDEAREIAARKGEE-------IPWGEDLSTNALKLVGE-EMGGLYFITDWPTESKPFYAMPYEDRPEISKSFDLMHGWLELSSGAQRIHLYDMLVESIKAKGMEPESFGFYLEAFRYGMPPHAGWGLGAERLIMSMLGLKNVREAVLFPR 423          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYD_THEVO (Aspartyl-tRNA synthetase OS=Thermoplasma volcanium GN=aspS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12
Identity = 45/160 (28.12%), Postives = 77/160 (48.12%), Query Frame = 3
Query:   87 VASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            +   PF RITY           KEG  F+    +G D + E  R +    F+    +  +P  ++ FY   N D  T+     L  +  E+  G+QR    D++  R  +  L ++ +++Y+   ++G   H+G+GLG ER+ +   G++NIR+   FPR
Sbjct:  270 IPEIPFPRITYKECIKLLE---KEGLEFQ----FGNDFSPEELRIIGR-NFKDFYFITEWPSSLRPFYTMPNRDDPTITNSFDLQYREVEVTSGAQRVHDPDLLLKRFNEKKLNIDSFKFYIQAFKYGMPPHAGWGLGLERLTMIVLGLNNIRETTLFPR 421          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYD_PICTO (Aspartyl-tRNA synthetase OS=Picrophilus torridus GN=aspS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12
Identity = 40/130 (30.77%), Postives = 73/130 (56.15%), Query Frame = 3
Query:  177 KVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            ++ +G D + E  R L E +++    +  +P  ++ FY    DD +T  + D+ + ++ E+  G+QR  RYD + + I++ GL  E + +YL   R+G   H+G+ +G ER+ +   GI N+R+   FPR
Sbjct:  290 QMNFGDDFSPEAARVLGE-RYKSFYFITEWPVSLRPFYTMKKDD-ETTKSFDLQLREL-EICSGAQRIHRYDDLVNNIKNKGLNPESFTFYLSAFRYGMPPHAGWAIGLERLTMNLLGIKNVRETTLFPR 416          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYD_METJA (Aspartyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=aspS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12
Identity = 44/155 (28.39%), Postives = 77/155 (49.68%), Query Frame = 3
Query:  102 FERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            F+RITY            E       + WG DL+ E E+ + E + +    + ++P  I+ FY   ++    +     L+ K  E+  G+QR   YD++   I+  GL  + + +YL+  ++G   H+G+GLG +R  +  T  +NIR+ + FPR
Sbjct:  285 FDRITYDEAIDIANAKGVE-------ISWGEDLSREAEKAIGE-EMEGLYFITDWPSEIRPFYTMPDEKNPNICKAFDLMYKDLEISSGAQRIHLYDLLVENIKKKGLNPDGFTYYLEAFKYGMPPHAGWGLGADRFTMVLTQQENIRECVLFPR 431          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYNC_SACDO (Asparaginyl-tRNA synthetase, cytoplasmic (Fragment) OS=Saccharomyces douglasii GN=DED81 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.974e-12
Identity = 30/84 (35.71%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  327 MDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGR 578
            +DVL+P VGE+ GGS R +  + + +  +  G+  + Y W++D R++GT  H G+G+G ER++ +      +RD   +PR+ GR
Sbjct:    1 VDVLMPNVGEITGGSMRIDDMNELMAGFKREGIDTDAYYWFIDQRKYGTCPHGGYGIGTERILAWLCDRFTVRDCSLYPRFSGR 84          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYD_PYRAE (Aspartyl-tRNA synthetase OS=Pyrobaculum aerophilum GN=aspS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.701e-11
Identity = 39/130 (30.00%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  180 VEWGIDLASEHERYLTEVKFQKPV-IVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            V WG D   E ++ L  +K+  PV  + N+P  ++ FY +  D  K+  + D+++  + E+  G+ R  + D ++  ++  GL    +E +L +  +G   H+GFGLGF R++    G+DN+R    +PR
Sbjct:  296 VNWGDDFTVEMQKAL--MKYYGPVYFIVNFPASLRPFYTKRKDGEKS-ESYDLIINGI-EVASGATRIHKRDELEEEMKKRGLDPRLFESHLSVFDYGMPPHAGFGLGFNRLVTALLGLDNVRHATLYPR 421          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYD_METVS (Aspartyl-tRNA synthetase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=aspS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11
Identity = 47/187 (25.13%), Postives = 91/187 (48.66%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLND-DLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            ++ +C+ D+E+   +  ++      +   T F ++TY+           E       +EWG DL+   E+ + + +      +  +P   + FY   ++ D K   A D++  ++ E+  G+QR  +YD +   I   G+  + +E YL+  R+G   H+G+GLG +R  +  T  +NIR+ + FPR
Sbjct:  255 VVHNCYTDIEYNRPSEIETLELNFEIPEKT-FPKVTYSEAVDVAVSKGVE-------IEWGEDLSRAAEKAIGD-EMGGLYFITEWPTQTRPFYTLPDENDNKICKAFDLMYKEL-EISSGAQRIHKYDSLVQNIAKRGMNPDSFETYLEAFRYGMPPHAGWGLGADRFTMILTNQENIRECVLFPR 431          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYD_SULSO (Aspartyl-tRNA synthetase OS=Sulfolobus solfataricus GN=aspS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 43/181 (23.76%), Postives = 89/181 (49.17%), Query Frame = 3
Query:   42 MAKNYDKSCINRLRMVASTP------FERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            M  +  + C N L+++  TP       ++++Y+             K     +++G D+ +   R L     +    V ++P   + FY +   D   ++    L+ +  E++ GS R    +V+++ ++  GL  E +E++L    +G   H+GFG+G  R++L  TG+ ++++V+PFPR
Sbjct:  249 MINDVKRECENELKILNYTPPNVRIPIKKVSYSDAIELL-------KSKGVNIKFGDDIGTPELRVLYNELKEDLYFVTDWPWLSRPFYTKQKKDNPQLSESFDLIFRWLEIVSGSSRNHVKEVLENSLKVRGLNPESFEFFLKWFDYGMPPHAGFGMGLARVMLMLTGLQSVKEVVPFPR 422          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYD_METST1.539e-1234.35Aspartyl-tRNA synthetase OS=Methanosphaera stadtma... [more]
SYD_METLZ1.539e-1228.19Aspartyl-tRNA synthetase OS=Methanocorpusculum lab... [more]
SYD_ARCFU2.010e-1228.75Aspartyl-tRNA synthetase OS=Archaeoglobus fulgidus... [more]
SYD_THEVO2.625e-1228.13Aspartyl-tRNA synthetase OS=Thermoplasma volcanium... [more]
SYD_PICTO4.477e-1230.77Aspartyl-tRNA synthetase OS=Picrophilus torridus G... [more]
SYD_METJA5.848e-1228.39Aspartyl-tRNA synthetase OS=Methanocaldococcus jan... [more]
SYNC_SACDO9.974e-1235.71Asparaginyl-tRNA synthetase, cytoplasmic (Fragment... [more]
SYD_PYRAE1.701e-1130.00Aspartyl-tRNA synthetase OS=Pyrobaculum aerophilum... [more]
SYD_METVS2.222e-1125.13Aspartyl-tRNA synthetase OS=Methanococcus vannieli... [more]
SYD_SULSO3.790e-1123.76Aspartyl-tRNA synthetase OS=Sulfolobus solfataricu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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