FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_PHOLL (Asparaginyl-tRNA synthetase OS=Photorhabdus luminescens subsp. laumondii GN=asnS PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.423e-58
Identity = 109/186 (58.60%), Postives = 134/186 (72.04%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            DD++F A+  DK  I RL    ++ F +I YT            G+ FEN V WG+DL+SEHERYL E  FQ PV+V NYPK IKAFYMR+NDD KTVAA+DVL P +GE+IGGSQREER D++  R+E+MGL  E Y WY DLRR+GTV HSGFGLGFER++ + TG+ N+RDVIPFPR P  A+
Sbjct:  283 DDLQFFAERVDKDVITRLEKFINSDFAQIDYTSAIEILQNC---GQKFENPVFWGVDLSSEHERYLAEKHFQAPVVVKNYPKDIKAFYMRMNDDGKTVAALDVLAPGIGEIIGGSQREERLDMLDKRLEEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLVAYVTGVPNVRDVIPFPRTPRSAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BACFN (Asparaginyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=asnS PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.423e-58
Identity = 108/193 (55.96%), Postives = 136/193 (70.47%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            W LD+C DD++F+   +DK  I RL  V    F R+ YT           +G  FE  V WG+DLASEHERYL E  F++PVI+ +YPK IKAFYM+ N+D KTV AMDVL PK+GE+IGGS+RE  Y+ + +RIE+M +P++   WYLD R+FGT  HSGFGLGFER++LF TG+ NIRDVIPFPR P  AD
Sbjct:  274 WALDNCADDVKFLNDMFDKGLIERLEGVLKEDFVRLPYTEGIKILEEAVAKGHKFEFPVYWGVDLASEHERYLVEDHFKRPVILTDYPKEIKAFYMKQNEDGKTVRAMDVLFPKIGEIIGGSERESDYNKLMTRIEEMHIPMKDMWWYLDTRKFGTCPHSGFGLGFERLLLFVTGMSNIRDVIPFPRTPRNAD 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHESR (Asparaginyl-tRNA synthetase OS=Shewanella sp. (strain MR-7) GN=asnS PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.164e-58
Identity = 112/194 (57.73%), Postives = 139/194 (71.65%), Query Frame = 3
Query:    3 DWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            D +L    DD++F A++ DK+ I RL+   S+ F ++ YT          K G+ FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+E+M L  E Y WY DLRR+GTV H+GFGLGFER++ + TG+ NIRDVIPFPR P  A+
Sbjct:  275 DAVLAERMDDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVEILQ---KCGREFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLEEMDLNKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVSNIRDVIPFPRAPRTAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHESA (Asparaginyl-tRNA synthetase OS=Shewanella sp. (strain ANA-3) GN=asnS PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.164e-58
Identity = 111/186 (59.68%), Postives = 136/186 (73.12%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            DD++F A++ DK+ I RL+   S+ F ++ YT          K G+ FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+E+M L  E Y WY DLRR+GTV HSGFGLGFER++ + TG+ NIRDVIPFPR P  A+
Sbjct:  283 DDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVDILQ---KCGREFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLEEMDLNKEDYWWYRDLRRYGTVPHSGFGLGFERLVSYVTGVSNIRDVIPFPRAPRTAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BACFR (Asparaginyl-tRNA synthetase OS=Bacteroides fragilis GN=asnS PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.133e-58
Identity = 108/193 (55.96%), Postives = 135/193 (69.95%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            W LD+C DD++F+   +DK  I RL  V    F R+ YT           +G  FE  V WG+DLASEHERYL E  F++PVI+ +YPK IKAFYM+ N+D KTV AMDVL PK+GE+IGGS+RE  Y+ +  RIE+M +P++   WYLD R+FGT  HSGFGLGFER++LF TG+ NIRDVIPFPR P  AD
Sbjct:  274 WALDNCADDVKFLNDMFDKGLIERLEGVLKEDFVRLPYTEGIKILEEAVAKGHKFEFPVYWGVDLASEHERYLVEDHFKRPVILTDYPKEIKAFYMKQNEDGKTVRAMDVLFPKIGEIIGGSERESDYNKLMMRIEEMHIPMKDMWWYLDTRKFGTCPHSGFGLGFERLLLFVTGMSNIRDVIPFPRTPRNAD 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SOLUE (Asparaginyl-tRNA synthetase OS=Solibacter usitatus (strain Ellin6076) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 113/197 (57.36%), Postives = 142/197 (72.08%), Query Frame = 3
Query:    3 DWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDM---GLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +++++ C  D++F+AK YD      L  + +  FERITYT          + G+ FE   +WG D+ SEHERYLTE  F KPVIV +YPK IKAFYMR NDD KTVAAMDVL P++GE+IGGSQREER+DV+  RI +M   GL  E Y WYLDLRRFG V+H+GFG+GFERM+++ TG+ NIRDVIPFPR PG A+
Sbjct:  267 EYVVNACGPDLDFLAKWYDPELRKTLDGLMNASFERITYTEAIDLLQ---RSGRSFEFPTQWGSDMQSEHERYLTEEVFNKPVIVTDYPKDIKAFYMRGNDDGKTVAAMDVLAPRIGEIIGGSQREERHDVLLQRIREMAAHGLREEAYWWYLDLRRFGGVEHAGFGMGFERMLMYLTGMKNIRDVIPFPRTPGNAE 460          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHISS (Asparaginyl-tRNA synthetase OS=Shigella sonnei (strain Ss046) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHIFL (Asparaginyl-tRNA synthetase OS=Shigella flexneri GN=asnS PE=3 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHIF8 (Asparaginyl-tRNA synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHIBS (Asparaginyl-tRNA synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_PHOLL2.423e-5858.60Asparaginyl-tRNA synthetase OS=Photorhabdus lumine... [more]
SYN_BACFN2.423e-5855.96Asparaginyl-tRNA synthetase OS=Bacteroides fragili... [more]
SYN_SHESR3.164e-5857.73Asparaginyl-tRNA synthetase OS=Shewanella sp. (str... [more]
SYN_SHESA3.164e-5859.68Asparaginyl-tRNA synthetase OS=Shewanella sp. (str... [more]
SYN_BACFR4.133e-5855.96Asparaginyl-tRNA synthetase OS=Bacteroides fragili... [more]
SYN_SOLUE5.398e-5857.36Asparaginyl-tRNA synthetase OS=Solibacter usitatus... [more]
SYN_SHISS5.398e-5857.59Asparaginyl-tRNA synthetase OS=Shigella sonnei (st... [more]
SYN_SHIFL5.398e-5857.59Asparaginyl-tRNA synthetase OS=Shigella flexneri G... [more]
SYN_SHIF85.398e-5857.59Asparaginyl-tRNA synthetase OS=Shigella flexneri s... [more]
SYN_SHIBS5.398e-5857.59Asparaginyl-tRNA synthetase OS=Shigella boydii ser... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
back to top