FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_HAEPS (Asparaginyl-tRNA synthetase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 112/192 (58.33%), Postives = 140/192 (72.92%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DD++F  K+ D + I+RL    ++ F +I YT          K GK+FE  VEWGIDL+SEHER+L E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER +V+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I++ TG+ NIR+VIPFPR P  A+
Sbjct:  278 VLEERKDDLKFFEKHIDNTVISRLENFINSDFAQIDYTDAIEVLL---KSGKNFEFPVEWGIDLSSEHERFLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLEVLDKRMVEMGLNPEDYWWYRDLRRYGTVPHSGFGLGFERLIVYVTGLQNIREVIPFPRAPRNAN 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_HAEIN (Asparaginyl-tRNA synthetase OS=Haemophilus influenzae GN=asnS PE=3 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/186 (59.14%), Postives = 135/186 (72.58%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            DD++F  K+ DK  I RL    ++ F +I YT          K GK FE  V WGIDL+SEHER+L E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER +V+  R+E+MGL  + Y WY DLR++G+V HSGFGLGFER+I++ TG+ NIRDVIPFPR P  A+
Sbjct:  284 DDLQFFEKHVDKDVITRLENFVNSDFAQIDYTDAIDVLL---KSGKKFEFPVSWGIDLSSEHERFLAEEYFKSPVVVKNYPKDIKAFYMRLNDDEKTVAAMDVLAPGIGEIIGGSQREERLEVLDKRMEEMGLNPDDYWWYRDLRKYGSVPHSGFGLGFERLIVYVTGVQNIRDVIPFPRAPRNAN 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ECOUT (Asparaginyl-tRNA synthetase OS=Escherichia coli (strain UTI89 / UPEC) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ECOLI (Asparaginyl-tRNA synthetase OS=Escherichia coli (strain K12) GN=asnS PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ECOLC (Asparaginyl-tRNA synthetase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ECOL6 (Asparaginyl-tRNA synthetase OS=Escherichia coli O6 GN=asnS PE=3 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ECOL5 (Asparaginyl-tRNA synthetase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ECOHS (Asparaginyl-tRNA synthetase OS=Escherichia coli O9:H4 (strain HS) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ECO57 (Asparaginyl-tRNA synthetase OS=Escherichia coli O157:H7 GN=asnS PE=3 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTEAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ECO24 (Asparaginyl-tRNA synthetase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_HAEPS5.398e-5858.33Asparaginyl-tRNA synthetase OS=Haemophilus parasui... [more]
SYN_HAEIN5.398e-5859.14Asparaginyl-tRNA synthetase OS=Haemophilus influen... [more]
SYN_ECOUT5.398e-5857.59Asparaginyl-tRNA synthetase OS=Escherichia coli (s... [more]
SYN_ECOLI5.398e-5857.59Asparaginyl-tRNA synthetase OS=Escherichia coli (s... [more]
SYN_ECOLC5.398e-5857.59Asparaginyl-tRNA synthetase OS=Escherichia coli (s... [more]
SYN_ECOL65.398e-5857.59Asparaginyl-tRNA synthetase OS=Escherichia coli O6... [more]
SYN_ECOL55.398e-5857.59Asparaginyl-tRNA synthetase OS=Escherichia coli O6... [more]
SYN_ECOHS5.398e-5857.59Asparaginyl-tRNA synthetase OS=Escherichia coli O9... [more]
SYN_ECO575.398e-5857.59Asparaginyl-tRNA synthetase OS=Escherichia coli O1... [more]
SYN_ECO245.398e-5857.59Asparaginyl-tRNA synthetase OS=Escherichia coli O1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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