FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHESM (Asparaginyl-tRNA synthetase OS=Shewanella sp. (strain MR-4) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.049e-58
Identity = 110/186 (59.14%), Postives = 136/186 (73.12%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            DD++F A++ DK+ I RL+   S+ F ++ YT          K G+ FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+E+M L  E Y WY DLRR+GTV H+GFGLGFER++ + TG+ NIRDVIPFPR P  A+
Sbjct:  283 DDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVEILQ---KCGREFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLEEMDLNKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVSNIRDVIPFPRAPRTAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_HAEIG (Asparaginyl-tRNA synthetase OS=Haemophilus influenzae (strain PittGG) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.049e-58
Identity = 110/186 (59.14%), Postives = 135/186 (72.58%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            DD++F  K+ DK  I RL    ++ F +I YT          K GK FE  V WGIDL+SEHER+L E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER +V+  R+E+MGL  + Y WY DLR++G+V HSGFGLGFER+I++ TG+ NIRDVIPFPR P  A+
Sbjct:  284 DDLQFFEKHVDKDVITRLENFVNSDFAQIDYTDAIDVLL---KSGKKFEFPVSWGIDLSSEHERFLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLEVLDKRMEEMGLNPDDYWWYRDLRKYGSVPHSGFGLGFERLIVYVTGVQNIRDVIPFPRAPRNAN 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_HAEIE (Asparaginyl-tRNA synthetase OS=Haemophilus influenzae (strain PittEE) GN=asnS PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.049e-58
Identity = 110/186 (59.14%), Postives = 135/186 (72.58%), Query Frame = 3
Query:   27 DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            DD++F  K+ DK  I RL    ++ F +I YT          K GK FE  V WGIDL+SEHER+L E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER +V+  R+E+MGL  + Y WY DLR++G+V HSGFGLGFER+I++ TG+ NIRDVIPFPR P  A+
Sbjct:  284 DDLQFFEKHVDKDVITRLENFVNSDFAQIDYTDAIDVLL---KSGKKFEFPVSWGIDLSSEHERFLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLEVLDKRMEEMGLNPDDYWWYRDLRKYGSVPHSGFGLGFERLIVYVTGVQNIRDVIPFPRAPRNAN 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_HAEDU (Asparaginyl-tRNA synthetase OS=Haemophilus ducreyi GN=asnS PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.049e-58
Identity = 111/192 (57.81%), Postives = 138/192 (71.88%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DDM+F AK+ DK  I RL    + PF ++ Y+          K GK FE  V WG+DL+SEHER+L E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER  V+ SR+ +MGL  E Y WY DLR++GTV H+GFGLGFER+I++ TG+ NIR+VIPFPR P  A+
Sbjct:  278 VLEERKDDMQFFAKHIDKEVITRLENFIAAPFAQVDYSDAIEILL---KSGKKFEFPVAWGVDLSSEHERFLAEEHFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLAVLDSRMIEMGLNPEDYWWYRDLRKYGTVPHAGFGLGFERLIVYVTGLQNIREVIPFPRAPRNAN 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_DESPS (Asparaginyl-tRNA synthetase OS=Desulfotalea psychrophila GN=asnS PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.049e-58
Identity = 109/191 (57.07%), Postives = 137/191 (71.73%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+HC  DM    K   K  I RL+ V +  F R+TYT            G+ F+  V+WGIDL SEHERYLTE  +++P+IV +YP  IK FYMR+N+D KTVAAMD+LVP +GEL+GGSQREERYD++  R+E  GL LE Y WYLDLR++GTV H+GFGLGFER++ F TG+ NIR+VIPFPR PG A
Sbjct:  260 VLEHCVTDMNLFDKFISKGIIERLQSVLAHDFARVTYTEAVDQLLA---SGQKFDFAVKWGIDLQSEHERYLTEQVYKRPLIVTDYPAAIKPFYMRMNEDGKTVAAMDILVPGIGELVGGSQREERYDLLAERMEAAGLDLEEYGWYLDLRKYGTVPHAGFGLGFERLVQFVTGMANIREVIPFPRTPGFA 447          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHIDS (Asparaginyl-tRNA synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=asnS PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.207e-58
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVIPFPR P  A
Sbjct:  277 VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDVRMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_PASMU (Asparaginyl-tRNA synthetase OS=Pasteurella multocida GN=asnS PE=3 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 9.207e-58
Identity = 112/192 (58.33%), Postives = 137/192 (71.35%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DD++F  K+ D   I+RL    ++ F +I YT          + GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV H+GFGLGFER+I++ TG+ NIRDVIPFPR P  A+
Sbjct:  278 VLEERKDDLKFFEKHVDNDVISRLENFINSDFAQIDYTDAIEVLL---QSGKKFEFPVSWGIDLSSEHERYLAEEHFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDKRMIEMGLNPEDYWWYRDLRRYGTVPHAGFGLGFERLIVYVTGVQNIRDVIPFPRSPRNAN 466          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHEFN (Asparaginyl-tRNA synthetase OS=Shewanella frigidimarina (strain NCIMB 400) GN=asnS PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.202e-57
Identity = 111/191 (58.12%), Postives = 135/191 (70.68%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DD+ F  +  DK+ I RL+   S+ F ++ YT            GK FE  VEWGIDL SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGG+QREER DV+ +R+ +M L  E Y WY DLRR+GTV HSGFGLGFER++ + TG++NIRDVIPFPR P  A
Sbjct:  277 VLEERMDDLNFFNERVDKTVIERLQAFVSSDFAQVDYTDAVEILKNC---GKKFEFAVEWGIDLQSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGAQREERLDVLDARLAEMDLSQEDYWWYRDLRRYGTVPHSGFGLGFERLVSYVTGVNNIRDVIPFPRAPRSA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CLOB8 (Asparaginyl-tRNA synthetase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=asnS PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.202e-57
Identity = 106/193 (54.92%), Postives = 141/193 (73.06%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +++D C +++EF  +  DK  + RL  V S+ F ++TYT          K GK F+  V WGIDL +EHERYLTE  F+KP+ V +YPK IKAFYMRLNDD KTVAA D+LVP +GE+IGGSQREER DV+K R+ ++ L  + Y WYL+LR++G  KH+GFGLGFER+I++ TG+ NIRDV+PFPR PG ++
Sbjct:  274 YVMDECPEELEFFNQFVDKGLLERLNHVVSSDFAKVTYTEAVEILQ---KCGKKFDYDVSWGIDLQTEHERYLTEEHFKKPLFVTDYPKDIKAFYMRLNDDGKTVAATDLLVPGIGEIIGGSQREERLDVLKDRMTELNLSEDDYWWYLELRKYGETKHAGFGLGFERLIMYITGMTNIRDVVPFPRTPGTSE 463          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHEHH (Asparaginyl-tRNA synthetase OS=Shewanella halifaxensis (strain HAW-EB4) GN=asnS PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.570e-57
Identity = 113/200 (56.50%), Postives = 138/200 (69.00%), Query Frame = 3
Query:    9 LLDHCF--------DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L +CF        DD+EF A+  +K+ I RL    S+ F +I YT          K+   FE  VEWGIDL SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGG+QREER DV+ +R+ +M L  E Y WY DLRR+GTV H+GFGLGFER++ + TG+ NIRDVIPFPR P  A+
Sbjct:  269 MLKYCFKAVLEERRDDLEFFAQRVEKTAIERLEAFVSSDFAQIDYTDAIEILKACDKD---FEYDVEWGIDLHSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGAQREERLDVLDARLAEMELSQEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVSNIRDVIPFPRSPKSAN 465          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_SHESM7.049e-5859.14Asparaginyl-tRNA synthetase OS=Shewanella sp. (str... [more]
SYN_HAEIG7.049e-5859.14Asparaginyl-tRNA synthetase OS=Haemophilus influen... [more]
SYN_HAEIE7.049e-5859.14Asparaginyl-tRNA synthetase OS=Haemophilus influen... [more]
SYN_HAEDU7.049e-5857.81Asparaginyl-tRNA synthetase OS=Haemophilus ducreyi... [more]
SYN_DESPS7.049e-5857.07Asparaginyl-tRNA synthetase OS=Desulfotalea psychr... [more]
SYN_SHIDS9.207e-5857.59Asparaginyl-tRNA synthetase OS=Shigella dysenteria... [more]
SYN_PASMU9.207e-5858.33Asparaginyl-tRNA synthetase OS=Pasteurella multoci... [more]
SYN_SHEFN1.202e-5758.12Asparaginyl-tRNA synthetase OS=Shewanella frigidim... [more]
SYN_CLOB81.202e-5754.92Asparaginyl-tRNA synthetase OS=Clostridium beijeri... [more]
SYN_SHEHH1.570e-5756.50Asparaginyl-tRNA synthetase OS=Shewanella halifaxe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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