FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_ENT38 (Asparaginyl-tRNA synthetase OS=Enterobacter sp. (strain 638) GN=asnS PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.570e-57
Identity = 110/191 (57.59%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DDM+F A+  D   + RL    S  F ++ YT          K G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+E+MGL    Y WY DLRR+GTV HSGFGLGFER+I + TG+ N+RDVI FPR P  A
Sbjct:  277 VLEERADDMKFFAERVDSDAVARLERFVSADFAQVDYTDAVAILE---KCGEKFENPVYWGVDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMEEMGLNPADYSWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIAFPRTPRNA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BACCN (Asparaginyl-tRNA synthetase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=asnS PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.570e-57
Identity = 108/193 (55.96%), Postives = 142/193 (73.58%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++L+H  ++MEF  K  DK+ + R+  V ++ F RITYT          + G  F+  VEWGIDL +EHERYL+E  F++PV V +YPK IKAFYMR+NDD KTVAA D+LVP +GELIGGSQREER DV+  RI+++G+  E Y WYL+LR++G  KH+GFGLGFER +++ TG+ NIRDVIPFPR PG A+
Sbjct:  273 YVLEHAPEEMEFFNKFVDKTVLERMNNVINSDFGRITYTEAIKVLQ---ESGADFKYPVEWGIDLQTEHERYLSEQVFKRPVFVTDYPKDIKAFYMRMNDDGKTVAATDLLVPGIGELIGGSQREERMDVLVDRIKELGMKEEDYWWYLELRKYGGTKHAGFGLGFERFLMYITGMGNIRDVIPFPRTPGSAE 462          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_TREDE (Asparaginyl-tRNA synthetase OS=Treponema denticola GN=asnS PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.051e-57
Identity = 110/193 (56.99%), Postives = 137/193 (70.98%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            W L+ C +D+EF      K  I  L+ V +TPF R+TYT          K    FE K  WG DL SEHER+LTE  ++ PVIV NYPK IK+FYM+LN+D KTV AMDVLVP +GE+IGGS+REE  D+++ RI+++GL  E Y WYLDLRR+GTV HSGFGLGFER++L+ TG+ NIRDVIPFPR P  A+
Sbjct:  283 WALEKCKEDLEFFDSRIKKGLIEMLKNVVNTPFTRLTYTEAIAELE---KHIDRFEFKPYWGCDLQSEHERFLTEEVYKGPVIVTNYPKEIKSFYMKLNEDGKTVRAMDVLVPGLGEIIGGSEREENLDILQGRIKELGLREEDYWWYLDLRRYGTVPHSGFGLGFERLLLYVTGMGNIRDVIPFPRAPKLAE 472          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHESW (Asparaginyl-tRNA synthetase OS=Shewanella sp. (strain W3-18-1) GN=asnS PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.051e-57
Identity = 111/192 (57.81%), Postives = 137/192 (71.35%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L    DD++F A++ DK+ I RL+   S+ F ++ YT          K GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +M L  E Y WY DLRR+GTV H+GFGLGFER++ + TG+ NIRDVIPFPR P  A+
Sbjct:  277 VLTERMDDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVDILQ---KCGKTFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLAEMDLNKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVSNIRDVIPFPRAPRTAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHEPC (Asparaginyl-tRNA synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=asnS PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.051e-57
Identity = 111/192 (57.81%), Postives = 137/192 (71.35%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L    DD++F A++ DK+ I RL+   S+ F ++ YT          K GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +M L  E Y WY DLRR+GTV H+GFGLGFER++ + TG+ NIRDVIPFPR P  A+
Sbjct:  277 VLTERMDDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVDILQ---KCGKTFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLAEMDLNKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVSNIRDVIPFPRAPRTAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CLOBL (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=asnS PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.679e-57
Identity = 109/194 (56.19%), Postives = 143/194 (73.71%), Query Frame = 3
Query:    3 DWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++++++  ++M F     DK   +RL  V ++ F+RITYT          K G  F+ +VEWGIDL +EHERYLTE  F+KPV V +YPK IKAFYMRLNDD KTVAA D+LVP VGE+IGGSQREER DV++ R+E++ L  E Y WYL+LR++G  KHSG+GLGFER++++ TG+ NIRDVIPFPR PG A+
Sbjct:  272 NYVMENAPEEMAFFNSFVDKGLFDRLDNVVNSDFKRITYTEAVELLQ---KSGGKFDYEVEWGIDLQTEHERYLTEQIFKKPVFVTDYPKDIKAFYMRLNDDGKTVAAADLLVPGVGEIIGGSQREERLDVLEKRMEELNLNKEDYWWYLELRKYGETKHSGYGLGFERILMYITGMTNIRDVIPFPRTPGSAE 462          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CLOBH (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=asnS PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.679e-57
Identity = 109/194 (56.19%), Postives = 143/194 (73.71%), Query Frame = 3
Query:    3 DWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++++++  ++M F     DK   +RL  V ++ F+RITYT          K G  F+ +VEWGIDL +EHERYLTE  F+KPV V +YPK IKAFYMRLNDD KTVAA D+LVP VGE+IGGSQREER DV++ R+E++ L  E Y WYL+LR++G  KHSG+GLGFER++++ TG+ NIRDVIPFPR PG A+
Sbjct:  272 NYVMENAPEEMAFFNSFVDKGLFDRLDNVVNSDFKRITYTEAVELLQ---KSGVKFDYEVEWGIDLQTEHERYLTEQIFKKPVFVTDYPKDIKAFYMRLNDDGKTVAAADLLVPGVGEIIGGSQREERLDVLEKRMEELNLNKEDYWWYLELRKYGETKHSGYGLGFERILMYITGMTNIRDVIPFPRTPGSAE 462          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CLOB1 (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=asnS PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.679e-57
Identity = 109/194 (56.19%), Postives = 143/194 (73.71%), Query Frame = 3
Query:    3 DWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++++++  ++M F     DK   +RL  V ++ F+RITYT          K G  F+ +VEWGIDL +EHERYLTE  F+KPV V +YPK IKAFYMRLNDD KTVAA D+LVP VGE+IGGSQREER DV++ R+E++ L  E Y WYL+LR++G  KHSG+GLGFER++++ TG+ NIRDVIPFPR PG A+
Sbjct:  272 NYVMENAPEEMAFFNSFVDKGLFDRLDNVVNSDFKRITYTEAVELLQ---KSGVKFDYEVEWGIDLQTEHERYLTEQIFKKPVFVTDYPKDIKAFYMRLNDDGKTVAAADLLVPGVGEIIGGSQREERLDVLEKRMEELNLNKEDYWWYLELRKYGETKHSGYGLGFERILMYITGMTNIRDVIPFPRTPGSAE 462          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_VIBPA (Asparaginyl-tRNA synthetase OS=Vibrio parahaemolyticus GN=asnS PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.499e-57
Identity = 108/192 (56.25%), Postives = 136/192 (70.83%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DD+EF A+  DK  I RL    S+ F ++ YT            G+ FE  VEWGID++SEHER+L E  F+ PVIV NYPK IKAFYMR+NDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MG+  E   WY DLRR+GTV H+GFGLGFER++ + TG+ N+RDVIPFPR P  A+
Sbjct:  277 VLEERRDDLEFFAQRIDKQAITRLEQFVSSDFAQVDYTDAIQILLD---SGREFEFPVEWGIDMSSEHERFLAEEHFKAPVIVKNYPKDIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMREMGIDPEHMSWYRDLRRYGTVPHAGFGLGFERLVSYVTGMGNVRDVIPFPRTPRSAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CLONN (Asparaginyl-tRNA synthetase OS=Clostridium novyi (strain NT) GN=asnS PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.499e-57
Identity = 107/191 (56.02%), Postives = 141/191 (73.82%), Query Frame = 3
Query:    3 DWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPG 575
            +++ ++  ++MEF  K  DK  + RL  V ++ F RI+YT          K G  FE  VEWGIDL +EHERYLTE  ++KPV V +YPK IKAFYMR+NDD KTVAA D+LVP +GE+IGGSQREER D++++R+ ++GL  E Y WYL+LR++G  KH+G+GLGFERMI++ TG+ NIRDVIPFPR PG
Sbjct:  272 NYVRENAPEEMEFFNKFIDKGLLERLDNVVNSDFARISYTEAVEILQ---KSGAEFEYPVEWGIDLQTEHERYLTEQIYKKPVFVTDYPKDIKAFYMRMNDDNKTVAAADLLVPGIGEIIGGSQREERLDILEARMAELGLEKEDYWWYLELRKYGETKHAGYGLGFERMIMYLTGMGNIRDVIPFPRTPG 459          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_ENT381.570e-5757.59Asparaginyl-tRNA synthetase OS=Enterobacter sp. (s... [more]
SYN_BACCN1.570e-5755.96Asparaginyl-tRNA synthetase OS=Bacillus cereus sub... [more]
SYN_TREDE2.051e-5756.99Asparaginyl-tRNA synthetase OS=Treponema denticola... [more]
SYN_SHESW2.051e-5757.81Asparaginyl-tRNA synthetase OS=Shewanella sp. (str... [more]
SYN_SHEPC2.051e-5757.81Asparaginyl-tRNA synthetase OS=Shewanella putrefac... [more]
SYN_CLOBL2.679e-5756.19Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]
SYN_CLOBH2.679e-5756.19Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]
SYN_CLOB12.679e-5756.19Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]
SYN_VIBPA3.499e-5756.25Asparaginyl-tRNA synthetase OS=Vibrio parahaemolyt... [more]
SYN_CLONN3.499e-5756.02Asparaginyl-tRNA synthetase OS=Clostridium novyi (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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