FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_VIBVY (Asparaginyl-tRNA synthetase OS=Vibrio vulnificus (strain YJ016) GN=asnS PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.569e-57
Identity = 108/192 (56.25%), Postives = 136/192 (70.83%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DD+EF A   DK  INRL    S+ F ++ YT            G+ FE  VEWGID++SEHER+L E  F+ PVIV NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MG+  E   WY DLRR+GTV H+GFGLGFER++ + TG+ N+RDVIPFPR P  A+
Sbjct:  277 VLEERRDDLEFFASRIDKDVINRLEQFVSSDFAQVDYTDAIQILLD---SGREFEFPVEWGIDMSSEHERFLAEEHFKAPVIVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMVEMGIDPEHMNWYRDLRRYGTVPHAGFGLGFERLVSYVTGMGNVRDVIPFPRTPRNAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_VIBVU (Asparaginyl-tRNA synthetase OS=Vibrio vulnificus GN=asnS PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.569e-57
Identity = 108/192 (56.25%), Postives = 136/192 (70.83%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L+   DD+EF A   DK  INRL    S+ F ++ YT            G+ FE  VEWGID++SEHER+L E  F+ PVIV NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MG+  E   WY DLRR+GTV H+GFGLGFER++ + TG+ N+RDVIPFPR P  A+
Sbjct:  277 VLEERRDDLEFFASRIDKDVINRLEQFVSSDFAQVDYTDAIQILLD---SGREFEFPVEWGIDMSSEHERFLAEEHFKAPVIVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMVEMGIDPEHMNWYRDLRRYGTVPHAGFGLGFERLVSYVTGMGNVRDVIPFPRTPRNAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHEPA (Asparaginyl-tRNA synthetase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=asnS PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.569e-57
Identity = 112/200 (56.00%), Postives = 138/200 (69.00%), Query Frame = 3
Query:    9 LLDHCF--------DDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L +CF        DD+EF A+  +K+ I RL    ++ F +I YT          K+   FE  VEWGIDL SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGG+QREER DV+ +R+ +M L  E Y WY DLRR+GTV H+GFGLGFER++ + TG+ NIRDVIPFPR P  A+
Sbjct:  269 MLKYCFKAVLEERRDDLEFFAQRVEKTAIERLENFVTSDFAQIDYTDAIEILKACDKD---FEYDVEWGIDLHSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGAQREERLDVLDARLAEMELSQEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVSNIRDVIPFPRSPKSAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHEDO (Asparaginyl-tRNA synthetase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=asnS PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.569e-57
Identity = 110/191 (57.59%), Postives = 135/191 (70.68%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRA 581
            +L+   DD+ F  +  DK+ I RL+   S+ F ++ YT            GK FE  VEWGIDL SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGG+QREER DV+ +R+ +M L  E Y WY DLRR+GTV H+GFGLGFER++ + TG++NIRDVIPFPR P  A
Sbjct:  277 VLNERMDDLSFFNERVDKTVIERLQAFVSSDFAQVDYTDAVEILKNC---GKKFEFAVEWGIDLQSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGAQREERLDVLDARLAEMELSQEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVNNIRDVIPFPRAPRSA 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_DESDG (Asparaginyl-tRNA synthetase OS=Desulfovibrio desulfuricans (strain G20) GN=asnS PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.968e-57
Identity = 105/188 (55.85%), Postives = 135/188 (71.81%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYP 572
            ++ HC  D++   K  DK    RL  + + PF R++YT            G+ FE   EWG DL +EHERYL E  F+KPV VY+YPK IKAFYMRLNDD KTVAAMD+LVP++GEL+GGSQREER DV+++RI+++G   + Y WYL+LR+FGT  H+GFG+GFER+++  TGI NIRDVIPFPR P
Sbjct:  272 VMKHCAADLDLFCKFVDKELSARLENILAHPFARVSYTEAIEILKA---SGRKFEYPAEWGADLQTEHERYLAEEHFKKPVAVYDYPKEIKAFYMRLNDDGKTVAAMDLLVPRIGELVGGSQREERLDVLEARIKELGQNPDDYWWYLELRKFGTAPHAGFGMGFERLLMLLTGIGNIRDVIPFPRTP 456          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CLOBB (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=asnS PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.968e-57
Identity = 104/193 (53.89%), Postives = 141/193 (73.06%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +++D C ++++F     DK  + RL  V S+ F ++TYT          KE   F+  V WGIDL +EHERYLTE  F+KP+ V +YPK IKAFYMR+N+D KTVAA D+LVP +GE+IGGSQREER DV+++R+ ++GL  E Y WYL+LR++G  KH+GFGLGFER+I++ TG+ NIRDVIPFPR PG ++
Sbjct:  274 YVMDECPEELQFFNSFVDKGLLERLNHVVSSDFAKVTYTEAVEILEKCDKE---FDYDVSWGIDLQTEHERYLTEEHFKKPLFVTDYPKEIKAFYMRMNEDNKTVAATDLLVPGIGEIIGGSQREERLDVLEARMAELGLKKEDYWWYLELRKYGETKHAGFGLGFERLIMYITGMTNIRDVIPFPRTPGTSE 463          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CLOBA (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=asnS PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.968e-57
Identity = 104/193 (53.89%), Postives = 141/193 (73.06%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +++D C ++++F     DK  + RL  V S+ F ++TYT          KE   F+  V WGIDL +EHERYLTE  F+KP+ V +YPK IKAFYMR+N+D KTVAA D+LVP +GE+IGGSQREER DV+++R+ ++GL  E Y WYL+LR++G  KH+GFGLGFER+I++ TG+ NIRDVIPFPR PG ++
Sbjct:  274 YVMDECPEELQFFNSFVDKGLLERLNHVVSSDFAKVTYTEAVEILEKCDKE---FDYDVSWGIDLQTEHERYLTEEHFKKPLFVTDYPKEIKAFYMRMNEDNKTVAATDLLVPGIGEIIGGSQREERLDVLEARMAELGLKKEDYWWYLELRKYGETKHAGFGLGFERLIMYITGMTNIRDVIPFPRTPGTSE 463          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHEB9 (Asparaginyl-tRNA synthetase OS=Shewanella baltica (strain OS195) GN=asnS PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.794e-57
Identity = 109/192 (56.77%), Postives = 137/192 (71.35%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L    DD+ F A++ DK+ I+RL+   S+ F ++ YT            G+ FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+  R+ +M L  E Y WY D+RR+GTV H+GFGLGFER++ + TG++NIRDVIPFPR P  A+
Sbjct:  277 VLTERMDDLTFFAQHVDKTVIDRLQSFVSSDFAQVDYTDAVEILQNC---GRTFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLAEMDLNQEDYWWYRDMRRYGTVPHAGFGLGFERLVSYVTGVNNIRDVIPFPRAPRTAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHEB8 (Asparaginyl-tRNA synthetase OS=Shewanella baltica (strain OS185) GN=asnS PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.794e-57
Identity = 109/192 (56.77%), Postives = 137/192 (71.35%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L    DD+ F A++ DK+ I+RL+   S+ F ++ YT            G+ FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+  R+ +M L  E Y WY D+RR+GTV H+GFGLGFER++ + TG++NIRDVIPFPR P  A+
Sbjct:  277 VLTERMDDLTFFAQHVDKTVIDRLQSFVSSDFAQVDYTDAVEILQNC---GRTFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLAEMDLNQEDYWWYRDMRRYGTVPHAGFGLGFERLVSYVTGVNNIRDVIPFPRAPRTAN 465          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_SHEB5 (Asparaginyl-tRNA synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=asnS PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.794e-57
Identity = 109/192 (56.77%), Postives = 137/192 (71.35%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +L    DD+ F A++ DK+ I+RL+   S+ F ++ YT            G+ FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+  R+ +M L  E Y WY D+RR+GTV H+GFGLGFER++ + TG++NIRDVIPFPR P  A+
Sbjct:  277 VLTERMDDLTFFAQHVDKTVIDRLQSFVSSDFAQVDYTDAVEILQNC---GRTFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLAEMDLNQEDYWWYRDMRRYGTVPHAGFGLGFERLVSYVTGVNNIRDVIPFPRAPRTAN 465          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_VIBVY4.569e-5756.25Asparaginyl-tRNA synthetase OS=Vibrio vulnificus (... [more]
SYN_VIBVU4.569e-5756.25Asparaginyl-tRNA synthetase OS=Vibrio vulnificus G... [more]
SYN_SHEPA4.569e-5756.00Asparaginyl-tRNA synthetase OS=Shewanella pealeana... [more]
SYN_SHEDO4.569e-5757.59Asparaginyl-tRNA synthetase OS=Shewanella denitrif... [more]
SYN_DESDG5.968e-5755.85Asparaginyl-tRNA synthetase OS=Desulfovibrio desul... [more]
SYN_CLOBB5.968e-5753.89Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]
SYN_CLOBA5.968e-5753.89Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]
SYN_SHEB97.794e-5756.77Asparaginyl-tRNA synthetase OS=Shewanella baltica ... [more]
SYN_SHEB87.794e-5756.77Asparaginyl-tRNA synthetase OS=Shewanella baltica ... [more]
SYN_SHEB57.794e-5756.77Asparaginyl-tRNA synthetase OS=Shewanella baltica ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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