FC929270

Overview
NameFC929270
Unique NameFC929270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CLOPS (Asparaginyl-tRNA synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=asnS PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.794e-57
Identity = 108/193 (55.96%), Postives = 140/193 (72.54%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +++D C +++ F  +  DK  + RL  V ++ F ++TYT          + GK FE  VEWGIDL +EHERYLTE  F+KPV V +YPK IKAFYMRLN+D KTVAAMD LVP +GE+IGGSQREER DV+K+R+ ++ L  E Y WYL+LR++G   HSGFGLGFER+I++ TG+ NIRDVIPFPR  G A+
Sbjct:  275 YVMDECPEEIAFFNQFVDKGLLERLNHVVNSEFGKVTYTEAVKLLQ---ESGKEFEYPVEWGIDLQTEHERYLTEQIFKKPVFVTDYPKDIKAFYMRLNEDGKTVAAMDCLVPGIGEIIGGSQREERLDVLKARMAELNLNEEDYWWYLELRKYGETVHSGFGLGFERLIMYITGMANIRDVIPFPRTTGTAE 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CLOPE (Asparaginyl-tRNA synthetase OS=Clostridium perfringens GN=asnS PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.794e-57
Identity = 108/193 (55.96%), Postives = 140/193 (72.54%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +++D C +++ F  +  DK  + RL  V ++ F ++TYT          + GK FE  VEWGIDL +EHERYLTE  F+KPV V +YPK IKAFYMRLN+D KTVAAMD LVP +GE+IGGSQREER DV+K+R+ ++ L  E Y WYL+LR++G   HSGFGLGFER+I++ TG+ NIRDVIPFPR  G A+
Sbjct:  275 YVMDECPEEIAFFNQFVDKGLLERLNHVVNSEFGKVTYTEAVKLLQ---ESGKEFEYPVEWGIDLQTEHERYLTEQIFKKPVFVTDYPKDIKAFYMRLNEDGKTVAAMDCLVPGIGEIIGGSQREERLDVLKARMAELNLNEEDYWWYLELRKYGETVHSGFGLGFERLIMYITGMANIRDVIPFPRTTGTAE 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CLOP1 (Asparaginyl-tRNA synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=asnS PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.794e-57
Identity = 108/193 (55.96%), Postives = 140/193 (72.54%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +++D C +++ F  +  DK  + RL  V ++ F ++TYT          + GK FE  VEWGIDL +EHERYLTE  F+KPV V +YPK IKAFYMRLN+D KTVAAMD LVP +GE+IGGSQREER DV+K+R+ ++ L  E Y WYL+LR++G   HSGFGLGFER+I++ TG+ NIRDVIPFPR  G A+
Sbjct:  275 YVMDECPEEIAFFNQFVDKGLLERLNHVVNSEFGKVTYTEAVKLLQ---ESGKEFEYPVEWGIDLQTEHERYLTEQIFKKPVFVTDYPKDIKAFYMRLNEDGKTVAAMDCLVPGIGEIIGGSQREERLDVLKARMAELNLNEEDYWWYLELRKYGETVHSGFGLGFERLIMYITGMANIRDVIPFPRTTGTAE 464          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CYTH3 (Asparaginyl-tRNA synthetase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=asnS PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.329e-56
Identity = 106/193 (54.92%), Postives = 136/193 (70.47%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            + LD+C DD+ F+ + YDK  I RL+ V  TPF R+ YT          ++   FE KVEWGIDL SEHERYL E  F+KPVI+ NYPK IKAFYM+ N+D KTV AMDVL P +GE+IGGSQRE+  + ++ R +++G+      WYL+ R+FG+  HSGFGLGFER++LF TG+ NIRDVIPFPR P  A+
Sbjct:  274 YALDNCIDDLNFLNEMYDKELIERLKSVVETPFVRLNYTEAVDILIATKQK---FEYKVEWGIDLQSEHERYLVEKHFKKPVILTNYPKAIKAFYMKANEDGKTVRAMDVLFPGIGEIIGGSQREDNLEKLQERCKEVGIHENDIWWYLETRKFGSAPHSGFGLGFERLMLFVTGMGNIRDVIPFPRTPQSAE 463          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_CLOAB (Asparaginyl-tRNA synthetase OS=Clostridium acetobutylicum GN=asnS PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.329e-56
Identity = 108/194 (55.67%), Postives = 141/194 (72.68%), Query Frame = 3
Query:    3 DWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++++++  ++MEF     DK   +RL  V ++ F RITYT          K G+ FE  V+WGIDL +EHERYLT+  F+KP+ V +YPK IKAFYMR+NDD KTVAA D+LVP VGE+IGGSQREER  V++ R+E++ L  E Y WYL+LR++G  KHSG+GLGFERMI++ TGI NIRDVIPFPR  G A+
Sbjct:  272 NFVMENAPEEMEFFNTRIDKGLFDRLHNVVNSEFGRITYTEAVDILE---KSGEKFEYPVKWGIDLQTEHERYLTDKVFKKPLFVTDYPKDIKAFYMRINDDNKTVAAADLLVPGVGEIIGGSQREERLAVLEKRMEELNLNKEDYWWYLELRKYGETKHSGYGLGFERMIMYLTGISNIRDVIPFPRTTGSAE 462          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYNO_ARATH (Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 1.329e-56
Identity = 111/194 (57.22%), Postives = 142/194 (73.20%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQ-KPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++LD+C +DMEF     +K  I RL  VA   F ++ YT          K  K F+  V+WG+DL SEHERY+TE  F  +PVI+ +YPK IKAFYMR NDD KTVAAMD+LVP++GELIGGSQREER +V+++R++++ L  E Y WYLDLRR+G+V H+GFGLGFER++ F TGIDNIRDVIPFPR P  A+
Sbjct:  376 YVLDNCKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILL---KANKKFDFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREERLEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPRTPASAE 566          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_XANCP (Asparaginyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris GN=asnS PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.736e-56
Identity = 105/192 (54.69%), Postives = 136/192 (70.83%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +LD   DD+ F+A+  DK+ I++L    + PFE+I YT            GK F+  VEWG+DL +EHER+LTE    +PV+V NYP+ IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+   GL  E Y WY D RR+G+V H+GFGLGFER++++  G+ NIRD IP+PR PG A+
Sbjct:  275 VLDERGDDLAFLAERVDKNAISKLEAFINAPFEQIDYTEAVKLLQ---NSGKKFDFPVEWGLDLQTEHERWLTEEHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAQFGLDKEHYSWYRDFRRYGSVPHAGFGLGFERLVVYVCGLSNIRDAIPYPRAPGSAE 463          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_XANC8 (Asparaginyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=asnS PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.736e-56
Identity = 105/192 (54.69%), Postives = 136/192 (70.83%), Query Frame = 3
Query:    9 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +LD   DD+ F+A+  DK+ I++L    + PFE+I YT            GK F+  VEWG+DL +EHER+LTE    +PV+V NYP+ IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+   GL  E Y WY D RR+G+V H+GFGLGFER++++  G+ NIRD IP+PR PG A+
Sbjct:  275 VLDERGDDLAFLAERVDKNAISKLEAFINAPFEQIDYTEAVKLLQ---NSGKKFDFPVEWGLDLQTEHERWLTEEHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAQFGLDKEHYSWYRDFRRYGSVPHAGFGLGFERLVVYVCGLSNIRDAIPYPRAPGSAE 463          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_FUSNN (Asparaginyl-tRNA synthetase OS=Fusobacterium nucleatum subsp. nucleatum GN=asnS PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.736e-56
Identity = 105/193 (54.40%), Postives = 140/193 (72.54%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            +++D+C ++MEF     +K   ++L  V +  F R+TYT          K GK FE  V+WGIDL SEHERYL E  F+KPV V +YPK IKAFYM+LN+D KTV AMD+L P +GE+IGGSQRE+ Y+++  R++++GL  E YE+YLDLRRFG+  HSG+GLGFERM+++ TG+ NIRDVIPFPR P  A+
Sbjct:  271 YVMDNCPEEMEFFNSFIEKGLFDKLNNVLNNDFGRVTYTEAIEILE---KSGKKFEFPVKWGIDLQSEHERYLAEEYFKKPVFVTDYPKDIKAFYMKLNEDNKTVRAMDLLAPGIGEIIGGSQREDNYELLTKRMKELGLNEEDYEFYLDLRRFGSFPHSGYGLGFERMMMYLTGMQNIRDVIPFPRTPNNAE 460          
BLAST of FC929270 vs. ExPASy Swiss-Prot
Match: SYN_BACHK (Asparaginyl-tRNA synthetase OS=Bacillus thuringiensis subsp. konkukian GN=asnS PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.736e-56
Identity = 107/193 (55.44%), Postives = 141/193 (73.06%), Query Frame = 3
Query:    6 WLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 584
            ++L+H  ++MEF     DK+ + R+  V ++ F RITYT          + G  F+  VEWGIDL +EHERYL+E  F++PV V +YPK IKAFYMRLNDD KTVAA D+LVP +GELIGGSQREER DV+  RI+++G+  E Y WYL+LR++G  KH+GFGLGFER +++ TG+ NIRDVIPFPR PG ++
Sbjct:  273 YVLEHAPEEMEFFNSFVDKTVLERMNNVINSDFGRITYTEAIKVLQ---ESGADFKYPVEWGIDLQTEHERYLSEEIFKRPVFVTDYPKDIKAFYMRLNDDGKTVAATDLLVPGIGELIGGSQREERMDVLVDRIKELGMNEEDYWWYLELRKYGGTKHAGFGLGFERFLMYITGMANIRDVIPFPRTPGSSE 462          
The following BLAST results are available for this feature:
BLAST of FC929270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SYN_CLOPS7.794e-5755.96Asparaginyl-tRNA synthetase OS=Clostridium perfrin... [more]
SYN_CLOPE7.794e-5755.96Asparaginyl-tRNA synthetase OS=Clostridium perfrin... [more]
SYN_CLOP17.794e-5755.96Asparaginyl-tRNA synthetase OS=Clostridium perfrin... [more]
SYN_CYTH31.329e-5654.92Asparaginyl-tRNA synthetase OS=Cytophaga hutchinso... [more]
SYN_CLOAB1.329e-5655.67Asparaginyl-tRNA synthetase OS=Clostridium acetobu... [more]
SYNO_ARATH1.329e-5657.22Asparaginyl-tRNA synthetase, chloroplastic/mitocho... [more]
SYN_XANCP1.736e-5654.69Asparaginyl-tRNA synthetase OS=Xanthomonas campest... [more]
SYN_XANC81.736e-5654.69Asparaginyl-tRNA synthetase OS=Xanthomonas campest... [more]
SYN_FUSNN1.736e-5654.40Asparaginyl-tRNA synthetase OS=Fusobacterium nucle... [more]
SYN_BACHK1.736e-5655.44Asparaginyl-tRNA synthetase OS=Bacillus thuringien... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929270 ID=FC929270; Name=FC929270; organism=Citrus clementina; type=EST; length=822bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTTA
CGGCGGAATTATGATTTATTATTAGAGAATATATTAATAGAATTTTGATT
GTAATAAAAAAAAAAAAAAAAA
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