FC929318

Overview
NameFC929318
Unique NameFC929318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15007 contig Ccv1_Contig15007:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP4_MOUSE (FK506-binding protein 4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  177 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKPASGEK 467
            GD++ VHY G L DGT FDSS +R D   F+LG G VIK WD  +  M VGE   +    +  YGA GSPP IP  ATL+F+ EL    G+  + E+
Sbjct:   50 GDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGAAGSPPKIPPNATLVFEVELFEFKGEDLTEEE 146          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP3_ARATH (FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplastic OS=Arabidopsis thaliana GN=FKBP13 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  165 QAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLG------MCVGEKRKLKIPAKLGY-----GAQGSPPTIPGGATLIFDTELV 434
            +A KG  IK HY GKL +G VFDSS+ RG P+ F +G G VIKGWDQG+LG      M  G KR L+IP +L Y     G +G    IP  + L+FD E +
Sbjct:  105 EAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 205          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP1_RHIOR (FK506-binding protein 1 OS=Rhizopus oryzae GN=FKBP1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  174 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVN 443
            KGD + +HY G L +G+VFDSS  R +P   ++G G VIKGWD+G+L + +G+K  L       YG +G PP IP  ATL F+ EL+ +N
Sbjct:   19 KGDTVTMHYTGTLQNGSVFDSSVRRNEPFVTQIGVGRVIKGWDEGVLQLSLGQKANLICTPDYAYGPRGFPPVIPPNATLNFEVELLKIN 108          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP_YARLI (FK506-binding protein 1 OS=Yarrowia lipolytica GN=FPR1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.508e-18
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  174 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVN 443
            KGD + +HY G L +G  FDSS +RG+P +  +G G VI+GWD+G+  + +GE+  L I    GYG +G P  IP  ATL+FD EL+ +N
Sbjct:   19 KGDAVTIHYVGTLENGQKFDSSRDRGEPFKTTIGVGDVIRGWDEGVPKLSLGERSVLTISGDYGYGERGFPGLIPPNATLVFDVELLGIN 108          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP4_RABIT (FK506-binding protein 4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.508e-18
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  177 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKPASGEK 467
            GD++ VHY G L DGT FDSS +R D   F+LG G VIK WD  +  M VGE  ++    +  YG+ GSPP IP  ATL+F+ EL    G+  + ++
Sbjct:   50 GDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTDDE 146          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP4_HUMAN (FK506-binding protein 4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.508e-18
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  177 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKPASGEK 467
            GD++ VHY G L DGT FDSS +R D   F+LG G VIK WD  +  M VGE   +    +  YG+ GSPP IP  ATL+F+ EL    G+  + E+
Sbjct:   50 GDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEE 146          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKB12_DROME (12 kDa FK506-binding protein OS=Drosophila melanogaster GN=FK506-bp2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.581e-18
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  177 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 440
            G K+ VHY G L DGT FDSS +R  P +F +G G VI+GWD+G+  + VG++ KL       YG++G P  IP  +TL FD EL+ V
Sbjct:   20 GQKVTVHYTGTLDDGTKFDSSRDRNKPFKFTIGKGEVIRGWDEGVAQLSVGQRAKLICSPDYAYGSRGHPGVIPPNSTLTFDVELLKV 107          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP4_NEUCR (FK506-binding protein 4 OS=Neurospora crassa GN=fpr-4 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  168 AHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 440
            A  GD++ + Y GKL +G VFDS+ ++G P  F+LG G VIKGWD G+ GM VG +R+L IPA L YG++ + P IP  +TLIFD +L+ +
Sbjct:  378 AKNGDRVGMRYIGKLQNGKVFDSN-KKGAPFSFKLGKGEVIKGWDIGVAGMAVGGERRLTIPAHLAYGSR-ALPGIPPNSTLIFDVKLLEI 466          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBA_AERHY (FKBP-type peptidyl-prolyl cis-trans isomerase fkpA OS=Aeromonas hydrophila GN=fkpA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.814e-18
Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  126 QIGVKYKPKTCDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKPASGE 464
            ++G   KPK  DI       +KVHY G LTDGT FDSS +RG+P  F L    VI GW +G+  M VG K K  +P+KL YG  G+  +IP  A L+FD EL+ +    A G+
Sbjct:  162 KMGTGAKPKATDI-------VKVHYTGTLTDGTKFDSSVDRGEPATFPL--NQVIPGWTEGVQLMPVGSKFKFFLPSKLAYGEHGA-GSIPANAVLVFDVELLAIEKPAADGD 264          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP_DEBHA (FK506-binding protein 1 OS=Debaryomyces hansenii GN=FPR1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 3
Query:  177 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVN 443
            GD + +HY G L +G  FDSS +RG P +  +G G VI GWD G+  + VG + KL IP    YG +G P  IP  ATL+FD EL+ VN
Sbjct:   24 GDLVTIHYTGTLENGKKFDSSRDRGKPFQCTIGVGQVIVGWDTGIPKLSVGSRAKLSIPGHEAYGDRGFPGLIPPNATLLFDVELLNVN 112          
The following BLAST results are available for this feature:
BLAST of FC929318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
FKBP4_MOUSE2.056e-1847.42FK506-binding protein 4 OS=Mus musculus GN=Fkbp4 P... [more]
FKBP3_ARATH2.056e-1848.51FKBP-type peptidyl-prolyl cis-trans isomerase 3, c... [more]
FKBP1_RHIOR2.056e-1846.67FK506-binding protein 1 OS=Rhizopus oryzae GN=FKBP... [more]
FKBP_YARLI3.508e-1846.67FK506-binding protein 1 OS=Yarrowia lipolytica GN=... [more]
FKBP4_RABIT3.508e-1845.36FK506-binding protein 4 OS=Oryctolagus cuniculus G... [more]
FKBP4_HUMAN3.508e-1846.39FK506-binding protein 4 OS=Homo sapiens GN=FKBP4 P... [more]
FKB12_DROME4.581e-1847.7312 kDa FK506-binding protein OS=Drosophila melanog... [more]
FKBP4_NEUCR5.983e-1850.55FK506-binding protein 4 OS=Neurospora crassa GN=fp... [more]
FKBA_AERHY7.814e-1845.13FKBP-type peptidyl-prolyl cis-trans isomerase fkpA... [more]
FKBP_DEBHA1.021e-1748.31FK506-binding protein 1 OS=Debaryomyces hansenii G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929318 ID=FC929318; Name=FC929318; organism=Citrus clementina; type=EST; length=740bp
GACAAACAGAGAGAATTGTGAAGATGAGTTTCAACTCAGTATTGAATATC
GCCGCTGCAATTTCGTTCCTTTTGGTTCTTTCGACGTTAGTTTCTGCTAA
CAAGTCAGGCGATGTAACAGAGTTACAGATTGGCGTAAAGTACAAGCCAA
AAACCTGTGACATTCAGGCTCACAAAGGTGATAAAATCAAAGTACATTAC
CGGGGAAAACTGACTGATGGAACTGTTTTTGATTCCAGTTTTGAAAGAGG
TGATCCCATTGAATTTGAGCTTGGCAGCGGTCATGTAATCAAAGGATGGG
ACCAAGGACTTTTGGGAATGTGCGTCGGTGAGAAGCGAAAGTTGAAAATT
CCTGCAAAGCTTGGTTATGGGGCCCAGGGTTCTCCCCCTACCATCCCAGG
TGGAGCAACATTGATCTTTGACACCGAGCTTGTAACAGTAAATGGGAAAC
CAGCAAGCGGAGAGAAAACTGAAGATGAGCTATGATTACCTCTCGATTGA
GCAGATTTACCTAAGTCATTCCTGTTGCTTTTAATGTATCGGCATAAACC
AGGTTTCATAGGCCAGAATAATTTATCTATTTAGTGACCTACAGCTGAAC
AATTTTTGTTGTTTGGATCAGAAGAAATCTTTTTAAGGGGACAAAATATT
AATCTCTGAATATTCGGAAGGTTGGTTGCCTCGCTCTTAAGTGATGCGAA
CATAGCATTATTAGATTTTTCGCAAAAAAAAAAAAAAAAA
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