FC929319

Overview
NameFC929319
Unique NameFC929319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12114 contig Ccv1_Contig12114:965..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CDK2_XENLA (Cell division protein kinase 2 OS=Xenopus laevis GN=cdk2 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.937e-15
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 217
            GTP+E +WPGVT++PD+KS FPKW  ++   VV  L+  G DLL++ML  D ++RI+A+ AL H +FRDV
Sbjct:  220 GTPDEVSWPGVTTMPDYKSTFPKWIRQDFSKVVPPLDEDGRDLLAQMLQYDSNKRISAKVALTHPFFRDV 289          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CKB22_ARATH (Cyclin-dependent kinase B2-2 OS=Arabidopsis thaliana GN=CDKB2-2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.530e-15
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 217
            GTPNE+ WPGV+ L D+   +P+W    L T V NL+ AG+DLLSKML  +P++RI+A+ A+EH YF D+
Sbjct:  241 GTPNEEVWPGVSKLKDWHE-YPQWKPLSLSTAVPNLDEAGLDLLSKMLEYEPAKRISAKKAMEHPYFDDL 309          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CDC2_SCHPO (Cell division control protein 2 OS=Schizosaccharomyces pombe GN=cdc2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.530e-15
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 214
            GTPNE+ WPGVT L D+KS FP+W   +L  VV N E   I+LLS ML  DP+ RI+A+ AL+  Y RD
Sbjct:  227 GTPNEEVWPGVTLLQDYKSTFPRWKRMDLHKVVPNGEEDAIELLSAMLVYDPAHRISAKRALQQNYLRD 295          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CDC2_DICDI (Cell division control protein 2 homolog OS=Dictyostelium discoideum GN=cdk1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.316e-15
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 220
            GTP++  WPGVT LP++ S FP WP +    +    EP  +DL++KML  +PS+RI+A+ AL H YF D++
Sbjct:  222 GTPDDSIWPGVTKLPEYVSTFPNWPGQPYNKIFPRCEPLALDLIAKMLQYEPSKRISAKEALLHPYFGDLD 292          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CC2H2_TRYBB (Cell division control protein 2 homolog 2 OS=Trypanosoma brucei brucei GN=CRK2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.316e-15
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 217
            GTP E TW GVTSLP     FP+W +K L T V  L+  G+DLL +MLC +P  RITA  AL+H YF +V
Sbjct:  262 GTPTEATWRGVTSLPHHNVNFPRWTAKPLRTAVPALDDDGVDLLRRMLCYNPRERITAYEALQHSYFDEV 331          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CKB21_ARATH (Cyclin-dependent kinase B2-1 OS=Arabidopsis thaliana GN=CDKB2-1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.640e-14
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 217
            GTPNE+ WPGV++L ++   +P+W    L + V NL+ AG+DLLSKML  +P++RI+A+ A+EH YF D+
Sbjct:  239 GTPNEEMWPGVSTLKNWHE-YPQWKPSTLSSAVPNLDEAGVDLLSKMLQYEPAKRISAKMAMEHPYFDDL 307          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CKB11_ORYSJ (Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp. japonica GN=CDKB1-1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.063e-13
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 220
            GTP E+ WPGVT L D+   FP+W  + L   V +LEP G+DLLSKML  +P+ RI+A++A+EH YF  ++
Sbjct:  230 GTPTEEQWPGVTDLRDWHE-FPQWKPQILERQVPSLEPEGVDLLSKMLQYNPANRISAKAAMEHPYFDSLD 299          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CKB21_ORYSJ (Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp. japonica GN=CDKB2-1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.813e-13
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 217
            GTPNE  WPGV+ LP++   +P+W   ++  +V  L+   +DLL KML  +PS+RI+A+ A+EH YF DV
Sbjct:  253 GTPNEQVWPGVSKLPNWHE-YPQWNPSKVSDLVHGLDADALDLLEKMLQYEPSKRISAKKAMEHPYFNDV 321          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CDC2C_DROME (Cell division control protein 2 cognate OS=Drosophila melanogaster GN=cdc2c PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.813e-13
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 2
Query:   11 TPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFV 226
            TP+E  WPGVT LPDFK+ FP+W    +   +   E    +L+  MLC DP+ RI+A+ AL+H YFR+V+ V
Sbjct:  224 TPDETNWPGVTQLPDFKTKFPRWEGTNMPQPI--TEHEAHELIMSMLCYDPNLRISAKDALQHAYFRNVQHV 293          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAVI (Cell division control protein 2 homolog OS=Plasmodium vivax GN=CRK2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.093e-13
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 214
            GTPN + WP VT LP +   F  +      T ++ L+  GIDLLSKML +DP++RITA+ ALEH YF++
Sbjct:  218 GTPNSENWPNVTELPKYDPDFMVYEPLPWETFLKGLDDTGIDLLSKMLRLDPNQRITAKQALEHAYFKE 286          
The following BLAST results are available for this feature:
BLAST of FC929319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CDK2_XENLA1.937e-1552.86Cell division protein kinase 2 OS=Xenopus laevis G... [more]
CKB22_ARATH2.530e-1552.86Cyclin-dependent kinase B2-2 OS=Arabidopsis thalia... [more]
CDC2_SCHPO2.530e-1555.07Cell division control protein 2 OS=Schizosaccharom... [more]
CDC2_DICDI4.316e-1546.48Cell division control protein 2 homolog OS=Dictyos... [more]
CC2H2_TRYBB4.316e-1554.29Cell division control protein 2 homolog 2 OS=Trypa... [more]
CKB21_ARATH1.640e-1450.00Cyclin-dependent kinase B2-1 OS=Arabidopsis thalia... [more]
CKB11_ORYSJ1.063e-1350.70Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp... [more]
CKB21_ORYSJ1.813e-1347.14Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp... [more]
CDC2C_DROME1.813e-1347.22Cell division control protein 2 cognate OS=Drosoph... [more]
CDC2H_PLAVI3.093e-1349.28Cell division control protein 2 homolog OS=Plasmod... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DF11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929319 ID=FC929319; Name=FC929319; organism=Citrus clementina; type=EST; length=535bp
GGCACGAGGAACACCTAATGAGGACACATGGCCTGGAGTGACTTCATTGC
CTGACTTTAAATCTGCCTTTCCTAAATGGCCTTCTAAGGAGTTGGGGACT
GTTGTTCGAAATCTTGAGCCAGCTGGCATTGATCTCCTTTCTAAAATGCT
CTGCATGGATCCAAGCAGAAGAATTACTGCCAGAAGTGCTCTAGAACATG
AATACTTCAGGGACGTCGAATTTGTACCCTAATATCTGTTGTATATGCTA
TTAGAGTGTTGACATTATTGTGAAGCCTTCGGTTTTGATTGTTTGCGAAA
TTTGCCGACTGTCTTTACTTGCAGTTTTACTGAAAAGTCTTACTACATGG
AATGGCTTTTTACAGTCATCTCTGGATTTGCCTAGTTTGTAATCGTGTAT
TCGCGGCTTTCTTGATCTTGTGGATAAATGTTTGTGCCAGTTTTTCTTTT
AATATTTGATATGTAATACACCAAATTGAATTTGTTGTTCGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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