FC929319

Overview
NameFC929319
Unique NameFC929319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12114 contig Ccv1_Contig12114:965..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CDC2D_ANTMA (Cell division control protein 2 homolog D OS=Antirrhinum majus GN=CDC2D PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.093e-13
Identity = 32/71 (45.07%), Postives = 53/71 (74.65%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 220
            GTPNE+ WPGV++L D+   +P+W ++ + + V  L+  G++LLS+ML  +PSRRI+A+ A+EH YF +++
Sbjct:  239 GTPNEEIWPGVSTLVDWHE-YPQWTAQPISSAVPGLDEKGLNLLSEMLHYEPSRRISAKKAMEHPYFDELD 308          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAYO (Cell division control protein 2 homolog OS=Plasmodium yoelii yoelii GN=CRK2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.040e-13
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 214
            GTPN   WP V  LP +   FP +      T ++ L+  GIDLLSKML +DP++RITA+ A+EH YF++
Sbjct:  219 GTPNSQNWPDVFKLPKYDPNFPVYEPLPWETFIKGLDDTGIDLLSKMLKLDPNQRITAKQAIEHPYFKE 287          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CDC2H_PLACH (Cell division control protein 2 homolog OS=Plasmodium chabaudi GN=CRK2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.040e-13
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 214
            GTPN   WP V  LP +   FP +      T ++ L+  GIDLLSKML +DP++RITA+ A+EH YF++
Sbjct:  218 GTPNSQNWPDVFKLPKYDPNFPVYEPLPWETFIKGLDDTGIDLLSKMLKLDPNQRITAKQAIEHPYFKE 286          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CKB11_ARATH (Cyclin-dependent kinase B1-1 OS=Arabidopsis thaliana GN=CDKB1-1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.276e-13
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 220
            GTP E  WPGV++L D+   +PKW  ++L   V +L P G+DLL+KML  +P+ RI+A++AL+H YF  ++
Sbjct:  236 GTPTEQQWPGVSTLRDWH-VYPKWEPQDLTLAVPSLSPQGVDLLTKMLKYNPAERISAKTALDHPYFDSLD 305          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CDC2H_PLABA (Cell division control protein 2 homolog OS=Plasmodium berghei (strain Anka) GN=CRK2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.276e-13
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 214
            GTPN   WP V  LP +   FP +      T ++ L+  GIDLLSKML +DP++RITA+ A+EH YF++
Sbjct:  218 GTPNSQNWPDVFKLPKYDPNFPVYNPLPWETFIKGLDDTGIDLLSKMLKLDPNQRITAKQAIEHPYFKE 286          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CC2H3_TRYBB (Cell division control protein 2 homolog 3 OS=Trypanosoma brucei brucei GN=CRK3 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.999e-13
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 2
Query:    8 GTPN--EDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEF 223
            GTP   E +W GV+SLPD++  FPKW  K L  V+  L+   +DLLS+ML  +P+ RI+A++AL+H +F D  F
Sbjct:  238 GTPMDAEGSWLGVSSLPDYRDVFPKWSGKPLTQVLPTLDGDAVDLLSQMLRYNPAERISAKAALQHPWFSDAMF 311          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CKB12_ARATH (Cyclin-dependent kinase B1-2 OS=Arabidopsis thaliana GN=CDKB1-2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.175e-12
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 220
            GTP E  WPGV +L D+   +PKW  ++L   V +L P GIDLL++ML  +P+ RI+A++AL+H YF  ++
Sbjct:  238 GTPTEQQWPGVMALRDWH-VYPKWEPQDLSRAVPSLSPEGIDLLTQMLKYNPAERISAKAALDHPYFDSLD 307          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CDC2H_THEPA (Cell division control protein 2 homolog OS=Theileria parva GN=CRK2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.175e-12
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP*YL 238
            GTP+ D+WP V +LP +   F  +  +   ++V  L  +GIDL+S+ML +DP +RI+A+ AL+H+YF+D+   P +L
Sbjct:  218 GTPSVDSWPQVVNLPAYNPDFSYYEKQSWSSIVPKLNESGIDLISRMLQLDPVQRISAKEALKHDYFKDLHRPPEFL 294          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAFK (Cell division control protein 2 homolog OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CRK2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.175e-12
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 214
            GTPN   WP VT LP +   F  +      + ++ L+ +GIDLLSKML +DP++RITA+ ALEH YF++
Sbjct:  218 GTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE 286          
BLAST of FC929319 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAF7 (Cell division control protein 2 homolog OS=Plasmodium falciparum (isolate 3D7) GN=CRK2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.175e-12
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 214
            GTPN   WP VT LP +   F  +      + ++ L+ +GIDLLSKML +DP++RITA+ ALEH YF++
Sbjct:  218 GTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE 286          
The following BLAST results are available for this feature:
BLAST of FC929319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CDC2D_ANTMA3.093e-1345.07Cell division control protein 2 homolog D OS=Antir... [more]
CDC2H_PLAYO4.040e-1347.83Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2H_PLACH4.040e-1347.83Cell division control protein 2 homolog OS=Plasmod... [more]
CKB11_ARATH5.276e-1346.48Cyclin-dependent kinase B1-1 OS=Arabidopsis thalia... [more]
CDC2H_PLABA5.276e-1347.83Cell division control protein 2 homolog OS=Plasmod... [more]
CC2H3_TRYBB8.999e-1347.30Cell division control protein 2 homolog 3 OS=Trypa... [more]
CKB12_ARATH1.175e-1246.48Cyclin-dependent kinase B1-2 OS=Arabidopsis thalia... [more]
CDC2H_THEPA1.175e-1241.56Cell division control protein 2 homolog OS=Theiler... [more]
CDC2H_PLAFK1.175e-1247.83Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2H_PLAF71.175e-1247.83Cell division control protein 2 homolog OS=Plasmod... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DF11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929319 ID=FC929319; Name=FC929319; organism=Citrus clementina; type=EST; length=535bp
GGCACGAGGAACACCTAATGAGGACACATGGCCTGGAGTGACTTCATTGC
CTGACTTTAAATCTGCCTTTCCTAAATGGCCTTCTAAGGAGTTGGGGACT
GTTGTTCGAAATCTTGAGCCAGCTGGCATTGATCTCCTTTCTAAAATGCT
CTGCATGGATCCAAGCAGAAGAATTACTGCCAGAAGTGCTCTAGAACATG
AATACTTCAGGGACGTCGAATTTGTACCCTAATATCTGTTGTATATGCTA
TTAGAGTGTTGACATTATTGTGAAGCCTTCGGTTTTGATTGTTTGCGAAA
TTTGCCGACTGTCTTTACTTGCAGTTTTACTGAAAAGTCTTACTACATGG
AATGGCTTTTTACAGTCATCTCTGGATTTGCCTAGTTTGTAATCGTGTAT
TCGCGGCTTTCTTGATCTTGTGGATAAATGTTTGTGCCAGTTTTTCTTTT
AATATTTGATATGTAATACACCAAATTGAATTTGTTGTTCGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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