FC929322

Overview
NameFC929322
Unique NameFC929322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15408 contig Ccv1_Contig15408:42..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929322 vs. ExPASy Swiss-Prot
Match: NENF_HUMAN (Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  271 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYK-FMSKYVKVGSIKSTVPVTDGA 609
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY    GKD++R +AKMS +  DLT D +GL   ELEAL +   K + +KY  VG     +   DG+
Sbjct:   42 PPVRL--FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVGYTARRILNEDGS 153          
BLAST of FC929322 vs. ExPASy Swiss-Prot
Match: PGRC2_HUMAN (Membrane-associated progesterone receptor component 2 OS=Homo sapiens GN=PGRMC2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 42/114 (36.84%), Postives = 72/114 (63.16%), Query Frame = 1
Query:  247 EEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 579
            EE      P ++  + + E+L+QYDGS + + +L+A+  +++DV++   FYGP GPY +FAG+DASR LA    ++   +D   D+S L   ++E++++WE +F  KY  VG +
Sbjct:   88 EESPATSLPRMKKRDFSLEQLRQYDGSRNPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 200          
BLAST of FC929322 vs. ExPASy Swiss-Prot
Match: PGRC1_PONAB (Membrane-associated progesterone receptor component 1 OS=Pongo abelii GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  259 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 579
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L   + E L DWE +F  KY  VG +
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKL 170          
BLAST of FC929322 vs. ExPASy Swiss-Prot
Match: PGRC1_HUMAN (Membrane-associated progesterone receptor component 1 OS=Homo sapiens GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  259 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 579
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L   + E L DWE +F  KY  VG +
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKL 170          
BLAST of FC929322 vs. ExPASy Swiss-Prot
Match: PGRC2_RAT (Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 41/114 (35.96%), Postives = 72/114 (63.16%), Query Frame = 1
Query:  247 EEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 579
            EE      P ++  + + E+L+QYDG+ + + +L+A+  +++DV++   FYGP GPY +FAG+DASR LA    ++   +D   D+S L   ++E++++WE +F  KY  VG +
Sbjct:   82 EESPAATLPRMKKRDFSLEQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 194          
BLAST of FC929322 vs. ExPASy Swiss-Prot
Match: PGRC2_MOUSE (Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 41/114 (35.96%), Postives = 72/114 (63.16%), Query Frame = 1
Query:  247 EEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 579
            EE      P ++  + + E+L+QYDG+ + + +L+A+  +++DV++   FYGP GPY +FAG+DASR LA    ++   +D   D+S L   ++E++++WE +F  KY  VG +
Sbjct:   82 EESPAATLPRMKKRDFSLEQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 194          
BLAST of FC929322 vs. ExPASy Swiss-Prot
Match: PGRC1_CHICK (Membrane-associated progesterone receptor component 1 OS=Gallus gallus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.888e-16
Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 1
Query:  136 SPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 579
            SP     +   L+ +Y +L G         ++ + +  E   P  P ++  + T E+L+ YDG    + +LMA+  +++DV+++  FYGP GPY +FAG+DASR LA    ++   +D   D+S L   + E L+DWE +F  KY  VG +
Sbjct:   28 SPLNLSLLGLCLFLLYQILRG---------ERPAAQPGEAGPPPLPKMKRRDFTLEQLRPYDGVRDPR-ILMAVNGKVFDVTRASKFYGPDGPYGIFAGRDASRGLATFCLDKEALRDDYDDLSDLNATQQETLRDWESQFTFKYHHVGKL 168          
BLAST of FC929322 vs. ExPASy Swiss-Prot
Match: CB5D2_XENTR (Cytochrome b5 domain-containing protein 2 OS=Xenopus tropicalis GN=cyb5d2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 49/148 (33.11%), Postives = 73/148 (49.32%), Query Frame = 1
Query:  268 PPPVQLGE---ITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGESTEPKEGVVDTPAESKGVVDTPAETKE 702
            P   +L E   +++EEL  YDG      + +AI  Q++DV +    YGPGG Y+ FAGKDASRA     F EK L  D++ L P ++  L +W   +   Y+ +G +        G    ES  P + + D    +  V+D   + KE
Sbjct:   36 PQQCELSEGRLMSKEELSVYDGGPGSSGIYLAILGQVFDVHKGSKHYGPGGSYSFFAGKDASRAYMTGDFTEKGLVDDVTELSPLQMLHLHNWLSFYQQNYITIGKL-------TGRFYDESGNPTKALED----ALKVIDIGLKLKE 172          
BLAST of FC929322 vs. ExPASy Swiss-Prot
Match: DAP1_SCHPO (Cytochrome P450 regulator dap1 OS=Schizosaccharomyces pombe GN=dap1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 51/142 (35.92%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  226 QQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEK-------DLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGESTE 630
            ++  + +    EP  P  +  + T  ELK+Y+GS +   + +AIK  +Y+V+    FYGP GPY+ FAG DASR LAK SF+++       +   D S L   E +AL DW+  F  KY  VG + S       A+  E+ E
Sbjct:   23 RKNEKSFIASEEPKQP--EWRDYTPAELKEYNGSKNSL-VFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRLISPREARAAATISETEE 161          
BLAST of FC929322 vs. ExPASy Swiss-Prot
Match: CB5D2_DANRE (Cytochrome b5 domain-containing protein 2 OS=Danio rerio GN=cyb5d2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 1
Query:  292 ITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 579
            +T+E+L  Y+G  + K L +AI  Q++DV + R  YGPGG Y  F GKDASRA     F E  L+ D+S     ++ AL DW   +   Y  VG +
Sbjct:   54 LTKEQLSLYNGGKNSKGLYLAILGQVFDVEKGRKHYGPGGGYHFFTGKDASRAFITGDFTEAGLSNDVSDFSESQIVALYDWLSFYQRDYTPVGKL 149          
The following BLAST results are available for this feature:
BLAST of FC929322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
NENF_HUMAN5.999e-1742.11Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1[more]
PGRC2_HUMAN1.745e-1636.84Membrane-associated progesterone receptor componen... [more]
PGRC1_PONAB1.745e-1642.34Membrane-associated progesterone receptor componen... [more]
PGRC1_HUMAN1.745e-1642.34Membrane-associated progesterone receptor componen... [more]
PGRC2_RAT2.977e-1635.96Membrane-associated progesterone receptor componen... [more]
PGRC2_MOUSE2.977e-1635.96Membrane-associated progesterone receptor componen... [more]
PGRC1_CHICK3.888e-1633.11Membrane-associated progesterone receptor componen... [more]
CB5D2_XENTR2.520e-1533.11Cytochrome b5 domain-containing protein 2 OS=Xenop... [more]
DAP1_SCHPO4.299e-1535.92Cytochrome P450 regulator dap1 OS=Schizosaccharomy... [more]
CB5D2_DANRE7.333e-1540.63Cytochrome b5 domain-containing protein 2 OS=Danio... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DG02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929322 ID=FC929322; Name=FC929322; organism=Citrus clementina; type=EST; length=818bp
TTTAAGACCAAACCCCTACAGACTCTGAGTGGATAATACCAAAGGGGACC
GGGGAAAAAAAAAATCTTGACCTCCGTGATGGCTCTGCAACTATGGGAGA
CTCTAAAGGAGGCGATAACAGCGTACACGGGGCTCTCCCCGGCGGCGTTT
TTTACAGTTGTTGCGTTGCTGTGGGCCATATACTATGTTCTGTCGGGAAT
GTTTGGTTCGTCCGATAATCATCATCAGCAGAGATCGAGGGAGTACGAGG
AACAGATGGAGCCTCTGCCACCGCCTGTTCAGCTAGGCGAGATTACCGAG
GAGGAGCTCAAACAGTACGATGGCTCCGATTCCAAAAAGCCCCTTCTCAT
GGCCATCAAGAGCCAGATCTACGATGTCTCTCAGAGCAGGATGTTTTATG
GACCTGGTGGGCCATATGCGTTGTTTGCTGGAAAGGATGCTAGCAGGGCC
CTTGCCAAGATGTCTTTTGAGGAAAAAGATTTAACTGGTGATATCTCTGG
TCTTGGTCCATTTGAGTTGGAGGCATTGCAGGACTGGGAGTATAAGTTCA
TGAGCAAGTATGTTAAGGTTGGATCTATCAAGTCGACAGTTCCAGTAACA
GATGGAGCCTCCTCTGGTGAATCCACTGAGCCTAAAGAAGGAGTTGTTGA
TACACCTGCAGAAAGTAAAGGAGTTGTTGATACACCTGCAGAAACTAAAG
AAGTAGATATCGCTAAGCCTGCTGAATATGGTCCGTCAGAAACTGCAGCC
GCTGGACCTGAGGCAACCCCATCTTCTGATGATACTAAGAAGGAATAAGC
CAAACCCCATCTGTTGAT
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