FC929360

Overview
NameFC929360
Unique NameFC929360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:152..964. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 2.092e-38
Identity = 101/239 (42.26%), Postives = 135/239 (56.49%), Query Frame = 1
Query:   67 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYK-----SQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            A E  K  F+RA++AEF+A            +G+K     +QT    NV          ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+MY++AQC+GAI    ++     S  T    G N+LADG ++G GL  EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL  I  TG GINPARS G+AVI +    + + W+FWVGPFIG A+A
Sbjct:    2 ASEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVK---------VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSS-LTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALA 223          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 3.568e-38
Identity = 100/234 (42.74%), Postives = 131/234 (55.98%), Query Frame = 1
Query:   67 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            A E  K  F+RA++AEF+A            +G+  Q     N    A    + ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RAVMY++AQC+GAI    ++     S       G N LA G  +G GL  EIIGT  LV  V + TD +R  RD  +   APL IGF+V + HL  I  TG GINPARS G+AVI +    + D W+FWVGPFIG A+A
Sbjct:    2 ASEFKKKIFWRAVVAEFLAMTLFIFISIGSALGF--QYPVRNNQTSGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSS-LPGNSLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGFSVALGHLLAIDYTGCGINPARSFGSAVITHN---FQDHWVFWVGPFIGGALA 225          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 1.038e-37
Identity = 100/239 (41.84%), Postives = 134/239 (56.07%), Query Frame = 1
Query:   67 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYK-----SQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            A E  K  F+RA++AEF+A            +G+K     +QT    NV          ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+MY++AQC+GAI    ++     S       G N+LADG ++G GL  EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL  I  TG GINPARS G+AVI +    + + W+FWVGPFIG A+A
Sbjct:    2 ASEFKKKLFWRAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVK---------VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSS-LPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALA 223          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.771e-37
Identity = 98/234 (41.88%), Postives = 130/234 (55.56%), Query Frame = 1
Query:   67 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            A E  K  F+RA++AEF+A            +G+        N    A    + ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RAVMY++AQC+GAI    ++     S       G NELA G ++G GL  EIIGT  LV  V + TD +R  RD  +    PL IG +V + HL  I  TG GINPARS G++VI +  K   D W+FWVGPFIG A+A
Sbjct:    2 ASEFKKKLFWRAVVAEFLAMILFVFISIGSALGFNYPV--RNNQTAGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDN-SLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGLSVALGHLLAIDYTGCGINPARSFGSSVITHNFK---DHWIFWVGPFIGGALA 225          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 3.021e-37
Identity = 98/239 (41.00%), Postives = 135/239 (56.49%), Query Frame = 1
Query:   67 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGY-----KSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            A E+ K  F+RA++AEF+A            +G+     ++QT    NV          ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RAVMY++AQC+GAI    ++     S       G N+LA G ++G GL  EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL  I  TG GINPARS G+AV+    + + + W+FWVGPFIG A+A
Sbjct:    2 ASEIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVK---------VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDN-SLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGGALA 223          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.945e-37
Identity = 98/235 (41.70%), Postives = 133/235 (56.60%), Query Frame = 1
Query:   67 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGV-GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            A E  K  F+RA++AEF+A            +G+     P K+      V   + ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RA+MY++AQC+GAI    ++     S       G N LA G ++G GL  EIIGT  LV  V + TD +R  RD  +    PL IGF+V + HL  I  TG GINPARS G++VI +    + D W+FWVGPFIGAA+A
Sbjct:    2 ASEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHY---PIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALA 225          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 5.152e-37
Identity = 98/235 (41.70%), Postives = 133/235 (56.60%), Query Frame = 1
Query:   67 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGV-GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            A E  K  F+RA++AEF+A            +G+     P K+      V   + ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RA+MY++AQC+GAI    ++     S       G N LA G ++G GL  EIIGT  LV  V + TD +R  RD  +    PL IGF+V + HL  I  TG GINPARS G++VI +    + D W+FWVGPFIGAA+A
Sbjct:    2 ASEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHY---PIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTD-RRRRRD--LGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALA 226          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 154.836 bits (390), Expect = 5.152e-37
Identity = 98/239 (41.00%), Postives = 136/239 (56.90%), Query Frame = 1
Query:   67 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGY-----KSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            A E+ K  F+RA++AEF+A            +G+     ++QT    NV          ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RAVMY++AQC+GAI    ++     S       G N+LA G ++G GL  EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL  I  TG GINPARS G+AV+    + + + W+FWVGPFIG+A+A
Sbjct:    2 ASEIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVK---------VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLEN-SLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGSALA 223          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.823e-35
Identity = 90/235 (38.30%), Postives = 125/235 (53.19%), Query Frame = 1
Query:   67 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 771
            A E  K +F+RA+IAEF+A            +G+    +   N        I+ ++ AFG  I  +      +SG H+NPAVT G  L+ ++S+++AVMY++AQCLGA+    ++     S       G N L+ G S G GL  EI+ TF LV  V + TD +R      V    PL IG +V + HL  I  TG G+NPARS G+AV+    K +   W+FWVGP IG A AA
Sbjct:    2 ASEFKKKAFWRAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGI-TSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVAVTDRRRHDVSGSV----PLAIGLSVALGHLIAIDYTGCGMNPARSFGSAVL---TKNFTYHWIFWVGPMIGGAAAA 228          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.026e-33
Identity = 86/227 (37.89%), Postives = 121/227 (53.30%), Query Frame = 1
Query:   88 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            +F++A+ AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NPARS G AVI      W++ W++WVGP IGA +A
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLA 244          
The following BLAST results are available for this feature:
BLAST of FC929360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
AQP1_HUMAN2.092e-3842.26Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_PIG3.568e-3842.74Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP1_PONAB1.038e-3741.84Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_CANFA1.771e-3741.88Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
AQP1_MOUSE3.021e-3741.00Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_BOVIN3.945e-3741.70Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP1_SHEEP5.152e-3741.70Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_RAT5.152e-3741.00Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQPA_RANES4.823e-3538.30Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP4_RAT2.026e-3337.89Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2BB07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929360 ID=FC929360; Name=FC929360; organism=Citrus clementina; type=EST; length=812bp
GGCACGAGGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCC
GGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAG
CCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTC
TTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGA
CGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCA
TGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGT
GGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAGAGAAGCGCCAGAGACTCCCACGTTCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTTACA
ACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTC
ATTGGTGCAGCAATTGCAGCTTTCTACCCCAATTCATCTTGAGAGCTGGA
GCTGTCAAGGCT
back to top