FC929412

Overview
NameFC929412
Unique NameFC929412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length779
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929412_ssr53 microsatellite FC929412_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11040 contig Ccv1_Contig11040:209..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929412 vs. ExPASy Swiss-Prot
Match: PMO25_SCHPO (Mo25-like protein OS=Schizosaccharomyces pombe GN=pmo25 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.952e-22
Identity = 61/193 (31.61%), Postives = 108/193 (55.96%), Query Frame = 2
Query:  194 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELL 772
            M  LF  +P++  D+VR   D +     + D ++S       E+ K ++ L+  L G +E EP ++  + L+ + ++ N   LL+  LPKL  E++KD   + + L R+ V S+    DY+ A+  +  +L++ Y   ++A   G++LREC RH+++   +L S+    FF  IQ  +FD+A+DA +TFK +L
Sbjct:    1 MSFLFNKRPKSTQDVVRCLCDNLPKLEINNDKKKS-----FEEVSKCLQNLRVSLCGTAEVEPDADLVSDLSFQIYQSNLPFLLVRYLPKLEFESKKDTGLIFSALLRRHVASRYPTVDYMLAHPQIFPVLVSYYRYQEVAFTAGSILRECSRHEALNEVLLNSRDFWTFFSLIQASSFDMASDAFSTFKSIL 188          
BLAST of FC929412 vs. ExPASy Swiss-Prot
Match: DEE76_CHLPR (Degreening-related gene dee76 protein OS=Chlorella protothecoides GN=DEE76 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22
Identity = 57/163 (34.97%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  293 ESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSK-LIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTR 778
            ESK++  + ++ K I  +K  ++G  E     E    + +E  R   +  L+T L  L+ E RKD  Q+   + R  +        DY+ A+ D+L  L  GYE+ ++AL+ G M RECIRH+ +A++VLE    ++ F+ + + +F++A+DA ATFK+LLTR
Sbjct:   19 ESKQDRVVEDISKAIMSIKEAIFGEDEQSSSKEHAQGIASEACRVGLVSDLVTYLTVLDFETRKDVVQIFCAIIRITLEDGGRPGRDYVLAHPDVLSTLFYGYEDPEIALNCGQMFRECIRHEDIAKFVLECNLFEELFEKLNVQSFEVASDAFATFKDLLTR 181          
BLAST of FC929412 vs. ExPASy Swiss-Prot
Match: HYMA_EMENI (Conidiophore development protein hymA OS=Emericella nidulans GN=hymA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12
Identity = 57/218 (26.15%), Postives = 98/218 (44.95%), Query Frame = 2
Query:  209 KSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQR-QQVHSKL----IASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMK-----------------------KFFDYIQLPNFDIAADAAATFKELLTR 778
            + + R P D+VR  +DL++     +    SK ED   EL K + ++K ++ G  E E  ++    L      E+ L  L   L  L  EARKD   + +++ R +  H       + S  +    +++  L  GYE++  A+  G +LRE ++   +A  +L  Q  +                       +FF +I    F+++ADA  TF+E+LTR
Sbjct:    7 RGRSRQPSDVVRSIKDLLLRLREPSTA--SKVED---ELAKQLSQMKLMVQGTQELEASTDQVHALVQAMLHEDLLYELAVALHNLPFEARKDTQTIFSHILRFKPPHGNSPDPPVISYIVHNRPEIIIELCRGYEHSQSAMPCGTILREALKFDVIAAIILYDQSKEGEPAIRLTEVQPNVPQRGTGVFWRFFHWIDRGTFELSADAFTTFREILTR 219          
The following BLAST results are available for this feature:
BLAST of FC929412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PMO25_SCHPO1.952e-2231.61Mo25-like protein OS=Schizosaccharomyces pombe GN=... [more]
DEE76_CHLPR2.550e-2234.97Degreening-related gene dee76 protein OS=Chlorella... [more]
HYMA_EMENI1.074e-1226.15Conidiophore development protein hymA OS=Emericell... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2BG10RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929412 ID=FC929412; Name=FC929412; organism=Citrus clementina; type=EST; length=779bp
ACAACTCAGACAGCAAAATTAAATTCGAAAGCTGAAACCCTAAAGCCTAA
TTAGAAGAAGAAGATACACAATAGGAATCTGTGCGTCAAAGCCGAAAGCT
GAGGCGCTCTCAGCCTCGGCGAGTCAATCGGTCCAGCGCCTCTCGAGCTC
AGCCAGTTCAAGTTCGATTAACGAATTAGACCCTAACACAAAAATGAAGG
GACTTTTCAAATCCAAGCCTCGTACTCCCGTCGACATCGTCCGCCAAACT
CGGGATCTTATTATTTACGCCAATCGCAGCGCAGATGTTCGTGAATCGAA
GCGCGAAGACAAGATGGCAGAGTTATGTAAAAACATCAGGGAGTTAAAGT
CAATACTTTATGGCAATAGTGAATCTGAGCCAGTTTCAGAGGCATGTGCA
CAATTGACTGCAGAGTTCTTCAGGGAAAACACGTTACGGCTTTTGATAAC
TTGTCTTCCAAAGTTGAACTTGGAGGCAAGGAAAGATGCCACTCAGGTTG
TTGCTAATTTACAGAGGCAACAAGTTCACTCAAAGTTGATTGCCTCTGAC
TACTTAGAAGCAAACATAGATCTTTTGGATATTCTGATAGCTGGTTATGA
AAACACAGACATGGCTTTACATTATGGTGCTATGCTTAGGGAGTGTATTC
GTCATCAGAGTGTTGCAAGATATGTGTTGGAATCCCAGCACATGAAGAAG
TTTTTTGACTATATACAGCTTCCAAATTTTGACATTGCTGCAGATGCTGC
TGCAACTTTTAAGGAACTGTTGACAAGGC
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