FC929414

Overview
NameFC929414
Unique NameFC929414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1879 contig Ccv1_Contig1879:386..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.653e-21
Identity = 48/103 (46.60%), Postives = 71/103 (68.93%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 319
            E  +V+EG+++VGF+T+   NNTL +KVLN G++FV P+GL+HFQ+N+GK  A   ++ NSQ PG   +  T+FG+NP+I    L K F+ D   V  L++KF
Sbjct:  119 EAGVVIEGSVFVGFLTT---NNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAVLTKTFRTDDVTVNKLKSKF 218          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.937e-21
Identity = 47/103 (45.63%), Postives = 72/103 (69.90%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 319
            E+  V+EG+++VGF+++   NNTL +KVLN G+ FV P+GL+HFQ+N+G+  A   +A NSQ PG V +  T+FG+ P I    L +AF+ D   V++L++KF
Sbjct:  119 EVGTVIEGSVFVGFLST---NNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGSKPEIPNAVLTRAFRTDDTTVQNLKSKF 218          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.937e-21
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGK-AFQLDPKIVKDLQNKF 319
            E+F+VLEGT YVGFVTS+  +  N L AKVLNKGDVFVFPQGLIHFQ NIG       S L+SQ PG +TIA+ VFG      P+ L +  F L P I   + + F
Sbjct:  118 EVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFG------PEHLSQLMFLLRPSISMRIWSSF 217          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.309e-20
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFI 322
            EI  V+EG+L VGFVT+    N L  + + KG+VFVFP+GL+HFQ N G T A A +ALNSQ PG  +IA  +FGA P +  D L +AFQ+D  +V+ +++KF+
Sbjct:  119 EIIFVVEGSLDVGFVTTA---NKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQVDGGMVEFIKSKFV 219          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.016e-20
Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 319
            E+  V+EG L VGF+T+    N L++K + KG+VFVFP+GL+HFQ N GK  AA  SA NSQ PG  +I  T+FGA+P++  D L + FQ++ + V+ +++KF
Sbjct:  124 EMVFVMEGELDVGFITTA---NVLVSKQITKGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPGTQSIPITLFGASPTVPDDVLAQTFQINIEDVQQIKSKF 223          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.497e-19
Identity = 48/103 (46.60%), Postives = 71/103 (68.93%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 319
            E+  V+EG L VGF+T+    N L++K + KG+VFVFP+GL+HFQ N G+  AA  SA NSQ PG  +I  T+FGA+P +  D L + FQ++ + V+ +++KF
Sbjct:  124 EMVFVMEGELDVGFITTA---NVLVSKKIIKGEVFVFPRGLVHFQKNNGEVPAAVISAFNSQLPGTQSIPITLFGASPPVPDDVLAQTFQINTEDVQQIKSKF 223          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.355e-19
Identity = 53/103 (51.46%), Postives = 68/103 (66.02%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 319
            EI  VLEG LYVGFVT+      LIAK LNKGDVF FP+GLIHFQ NI  + A+  +A +SQ PG  ++  ++FGA P    D L K+FQL  K VK ++ ++
Sbjct:  113 EIIFVLEGQLYVGFVTTA---GKLIAKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFGALPD---DILAKSFQLKHKQVKKIKLRY 209          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.703e-19
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNK 316
            E+  VL+GTL VGF+T+    N L  K ++ GDVFVFP+GL+HFQ N G T AA  SA NSQ PG  ++A T+F A+P +    L KAFQ+  K V+ ++++
Sbjct:  117 EMVFVLQGTLDVGFITTA---NKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGVLTKAFQVGTKEVEKIKSR 215          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.703e-19
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNK 316
            E+  VLEG L VGF+T+    N L  K +  G+VFVFP+GL+HFQ N GK+ A+  SA NSQ PG  ++A T+F A P++  D L K FQ+  K+V  ++ +
Sbjct:  116 EVVYVLEGELEVGFITTA---NKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKTFQVGSKMVDKIKER 214          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.655e-18
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFING 328
            E+ +VL G L VG + +  + N   +KV+  G+ FV P+GL+HFQFN+GKT A    + NSQ PG V +  T+FG+NP I    L KA ++D  +V+ L++KF  G
Sbjct:  123 EVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDTGVVELLKSKFTGG 228          
The following BLAST results are available for this feature:
BLAST of FC929414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
GLT2_ARATH4.653e-2146.60Germin-like protein subfamily T member 2 OS=Arabid... [more]
GLT1_ARATH7.937e-2145.63Germin-like protein subfamily T member 1 OS=Arabid... [more]
GLP1_MESCR7.937e-2154.72Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL13_ORYSJ2.309e-2050.00Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
NEC1_NICPL3.016e-2047.57Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE... [more]
NEC1_NICLS1.497e-1946.60Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana s... [more]
GL25_ARATH4.355e-1951.46Probable germin-like protein subfamily 2 member 5 ... [more]
GL52_ORYSJ9.703e-1948.04Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL22_ARATH9.703e-1946.08Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
GL34_ORYSJ1.655e-1843.40Putative germin-like protein 3-4 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2BH02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929414 ID=FC929414; Name=FC929414; organism=Citrus clementina; type=EST; length=512bp
GGCACGAGGCGAAATCTTCTTAGTCCTGGAAGGAACTCTTTATGTCGGTT
TTGTGACATCAGACCAACTGAATAACACACTCATCGCAAAAGTTCTAAAT
AAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGATTCACTTCCAATTCAA
CATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCTAAACAGCCAATTCC
CGGGTGAAGTTACCATAGCCGACACAGTCTTTGGAGCCAATCCTTCAATC
AATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGACCCAAAGATAGTGAA
AGATCTTCAAAATAAGTTCATTAATGGCAATTAGGAGAAGGAATTAATGA
GCTTTAATATAAATGGCCTCTTCACTAGTGGCTGTATTACTTTATCTCCA
GATTATCATATCTTAATTAATGTAATAAAAGAGGTCTCTCATGAACCTCT
CTCCAGGCTGACTGTGGCCATGTAATAAACATAATTGTTATTGTTAAAAA
AAAAAAAAAAAA
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