FC929416

Overview
NameFC929416
Unique NameFC929416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length868
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15009 contig Ccv1_Contig15009:1..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929416 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.955e-17
Identity = 55/205 (26.83%), Postives = 103/205 (50.24%), Query Frame = -2
Query:  193 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYE--XXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELA 801
            G+ SA++T+  Q++G+  YEM+G++LQR   +L L    + +++     IL+FL + P     AA ++  ++    AYAL   +++FLQ Q I  P  YI    + +++ L+++ V+                 + W       +YI+K +  +  W GF+ +A        +L+    +M+C E W F+++   +G+L   ELA
Sbjct:  153 GIVSALDTVGTQSFGSGNYEMVGLHLQRILAILLLIQFPIFLIWWKIEGILLFLRQDPLTCMFAAKYMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGAPVAVALTLWSACAVLIIYIMKVNG-RQAWGGFSREALKNWGPLCRLAVPGVIMICSEYWAFELVTFASGVLGTTELA 356          
BLAST of FC929416 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.812e-14
Identity = 56/212 (26.42%), Postives = 100/212 (47.17%), Query Frame = -2
Query:  181 LGMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIA----SSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSL 804
            +G+ SA +TL  Q++G+   + +G+ LQR A++L L  +    L++ ++ IL+   + P+++        +F+ GL P IF Y L   + K+LQ Q I  P          V+ + ++  V                S +   +   +YIV       TW G++ Q       FF L+  S +M+C+E W ++I   L GLL   +L+  ++
Sbjct:   86 VGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPEVSRLTQDYVMIFIPGL-PVIFLYNL---LAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLLSVVDLSAQAV 293          
BLAST of FC929416 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.162e-13
Identity = 58/209 (27.75%), Postives = 99/209 (47.37%), Query Frame = -2
Query:  181 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYE--XXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSL 801
            G+ S+++TL  QA+GANK   + IYLQR  ++L +  I + ++++    ILIFL + P +A     ++   I     YA+   ++++LQAQ I  P  Y+      +++LL+++ V+                 ++W   I   +YI  S      W GF+ QA   L      S    +M+  E   +++  L AG L    LA  S+
Sbjct:  147 GVISSLDTLATQAFGANKPYNVAIYLQRCLLILAVLHIPVALIWLNLEHILIFLHQDPMVAHLCGRYMRVFILAAPGYAVFEALKRYLQAQGIFTPITYVLCFAAPLNILLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLILYICFSS-TPIPWPGFSRQALKNLSPMLHFSFHGMLMIVTEWAAYEMTSLGAGYLGTAPLASQSI 354          
BLAST of FC929416 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.518e-13
Identity = 55/201 (27.36%), Postives = 96/201 (47.76%), Query Frame = -2
Query:  211 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIA----SSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLL 801
            G+ SA +TL  Q++G+   + +G+ LQR +++L L  +    L++ ++ IL+   + P ++      A +F+ GL P IF Y+L   + K+LQ Q IV P          V+ + ++  V                S ++     F++IV       TW G++ Q       F  L+  S +M+C+E W ++I   L GLL
Sbjct:  116 GLSSACDTLMSQSFGSPNKKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQDYAMIFIPGL-PAIFLYSL---LAKYLQNQGIVWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANTISQFVQAAFLFLHIVLKKLHLETWEGWSSQCLRDWGPFLSLAIPSMLMMCVEWWAYEIGSFLMGLL 312          
BLAST of FC929416 vs. ExPASy Swiss-Prot
Match: YD338_YEAST (Uncharacterized transporter YDR338C OS=Saccharomyces cerevisiae GN=YDR338C PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12
Identity = 51/208 (24.52%), Postives = 99/208 (47.60%), Query Frame = -2
Query:  184 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYE--XXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDS 801
            G+ ++++TLC QAYG+ ++  +G++LQR      +  I   V++ +S P+L ++    ++ +  + F+  LI    AY     +++FLQAQ I     Y+ T    +++L+S+  V+                 ++W++      Y +  D  K  W GF+ +AF+       L+ +  +ML  E   +++L L +       LA  S
Sbjct:  284 GIATSLDTLCPQAYGSGRFYSVGVHLQRCIAFSLVIYIPFAVMWWYSEPLLSYIIPEKELINLTSRFLRVLILGAPAYIFFENLKRFLQAQGIFDAGIYVLTICAPLNVLVSYTLVWNKYIGVGFIGAAIAVVLNFWLMFFLLLFYALYIDGRK-CWGGFSRKAFTHWNDLGHLAFSGIIMLEAEELSYELLTLFSAYYGVSYLAAQS 490          
The following BLAST results are available for this feature:
BLAST of FC929416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
YJ2D_SCHPO2.955e-1726.83Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
S47A2_PONAB6.812e-1426.42Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
YL47_SCHPO1.162e-1327.75Uncharacterized transporter C323.07c OS=Schizosacc... [more]
S47A2_RABIT1.518e-1327.36Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]
YD338_YEAST2.862e-1224.52Uncharacterized transporter YDR338C OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2BH04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929416 ID=FC929416; Name=FC929416; organism=Citrus clementina; type=EST; length=868bp
GGAAAATTACCCATTTGAACAATCAAATGTAGCAAATGATGGCTTTGGCA
ACCAAATGAAATCATGAGTGATTTGTGAAACTAATTTACTGAAAGTTAAG
GGGGGAGAGCTTAGATGCAATTATCAGAAAAGGGCGTGACCAAAAAGGGA
AGGAAAATAGTTTTCTGCTTACCAAATGGAAAGAGAGTCCAAAGCCAACT
CCGGATTTGGTAACAAACCAGCCAATAGAACAAGAATCTGAAAGTACCAC
GTCTCCAAGCACAGCATCACAGCGGAGGCAGCCGATAGTTTGAAGAAGGA
AGGGAGACCAGAGAAGGCCTGAACAGTAAACCCACGCCACGTGTGCTTAC
ACCTATCACTTTTAACAATATAAACAAACTGAGCAATCACAACAATCCAC
CAGGATAAGCTCAAGATCAGTGAGGCGCCAATCAAGCCAAGCCCGATTTC
GTAGACTGCAACCCAACTTAGCAGCAGATGCACCACTAACGTGGCCGTTG
AAATGTATGCACTTGGAGCCACTATGCTTTGTGCTTGCAAAAATTTTTGG
ATTGGGAAGTTCAAGGCGTATGCAAAGATTTGGGGTATCAGGCCGTAGAC
AAAAACTGCCGCTGATGAGGCAATATCTGGCGACTCCCCTAGAAAAATCA
AAATTGGTCTCGAAAAGACGTATAGAACTGTCATTAAAATCCCCGTGAGC
GTCAGCAGAACCGCTGATCTTTGCAAATATATCCCTAGCATTTCATATTT
GTTTGCACCGTATGCTTGCCCACATAATGTCTCCACGGCACTTCCCATTC
CCAACTGTTAACAAAAGATTTAATTATAAGAATATTAAAGTACCCTGTGT
GCGTGTGCGTATGTACTT
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