FC929424

Overview
NameFC929424
Unique NameFC929424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9261 contig Ccv1_Contig9261:1..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.022e-18
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  208 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 462
            +EQ   D K +  EE+  H  +K  W+I+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   Y IG++ P
Sbjct:    2 AEQSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHP 86          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 6.022e-18
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  208 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 462
            +EQ     K +  EE+  HN +K  WLI+  KVYD++ F++DHPGG+EVL    G DAT +FED+GHS  ARE+   + IG++ P
Sbjct:    2 AEQSDKAVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGHSTDARELSKTFIIGELHP 86          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 91.2781 bits (225), Expect = 7.866e-18
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  214 QMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 462
            Q   D K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   + IG++ P
Sbjct:    4 QSDKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHP 86          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.866e-18
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  247 EEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            EEV  HN   D ++++  KVYD+S F+D HPGG+EVL+   G+DA+  FEDVGHS+ A+E+++K+YIG++
Sbjct:    9 EEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNL 78          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_PIG (Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.027e-17
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  208 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 462
            +EQ     K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   + IG++ P
Sbjct:    2 AEQSDKAVKYYTLEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHP 86          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_BOVIN (Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.342e-17
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  208 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 462
            +E+ +   K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   + IG++ P
Sbjct:    2 AEESSKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHP 86          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.989e-17
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  214 QMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 462
            Q   D K +  EE+  H  +K  W+I+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   Y IG++ P
Sbjct:    4 QSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHP 86          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_CHICK (Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 3.904e-17
Identity = 35/82 (42.68%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  232 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPR 477
            + ++ EEV  HN ++  W+I+  ++YD++ F+D+HPGG+EVL    G DAT +FEDVGHS  AR + + + IG++ P   P+
Sbjct:   15 RYYRLEEVQKHNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGHSTDARALSETFIIGELHPDDRPK 96          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.098e-17
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  229 PKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQP 507
            P+ +  EEVA HN  + CW +  GKVYD + ++D+HPGG E ++   G DAT++F  + HS  A+ M+ +YYIGD+  S      A +P  QP
Sbjct:  497 PRQYTMEEVAAHNTEESCWFVHGGKVYDATPYLDEHPGGAESILIVAGADATDEFNSI-HSSKAKAMLAQYYIGDLVASKPAAAGATVPEPQP 588          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.659e-17
Identity = 38/85 (44.71%), Postives = 60/85 (70.59%), Query Frame = 1
Query:  244 FEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDID-PSTVPRKRAYIP 495
            +++VA HN  KD +++I  KVYD++ F+D+HPGG+EVL+   G+D+T  FEDVGHSD ARE ++   +G +   +  P+ +A +P
Sbjct:    7 YQDVAEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGHSDEAREALEPLLVGTLKRQAGDPKPKAPLP 91          
The following BLAST results are available for this feature:
BLAST of FC929424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CYB5_RAT6.022e-1847.06Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
CYB5_HORSE6.022e-1847.06Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]
CYB5_RABIT7.866e-1848.19Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB52_SCHPO7.866e-1851.43Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]
CYB5_PIG1.027e-1747.06Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3[more]
CYB5_BOVIN1.342e-1745.88Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3[more]
CYB5_MOUSE2.989e-1746.99Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
CYB5_CHICK3.904e-1742.68Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4[more]
NIA_VOLCA5.098e-1741.94Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]
CYB5_NEUCR6.659e-1744.71Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CA01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929424 ID=FC929424; Name=FC929424; organism=Citrus clementina; type=EST; length=875bp
TGTAAGCAAGCGGATCACAGATTCCTCACTTTGTTTGATTTCAAATTCTA
CTTCTTTAGAGTTTAAACATAAAAGGGTTTCTTTATTTGCTGTTGTTTTG
ATCAAAAAGTTCCCTTTTTGGTTGGTGTTTGGGTCGATTCTACATTTTTA
CTTTATTTTTTTGTGGGGTTTTTTTGAATTTGTTGAGGTTTTGTGTTTAG
CTGCAGTAGCGAACAAATGGCCTCAGATCCAAAGATTCACCAGTTCGAAG
AGGTCGCCACGCACAACAAAACTAAGGATTGCTGGCTTATTATTTCTGGC
AAGGTGTATGATGTGTCCTCGTTCATGGATGATCACCCTGGAGGAGATGA
GGTTTTGATTTCTGCAACTGGGAAAGATGCAACAAATGACTTTGAAGATG
TGGGTCACAGTGACTCCGCTAGGGAGATGATGGACAAGTACTATATTGGT
GACATTGATCCCTCAACTGTTCCTCGGAAACGTGCATATATTCCACCGCA
GCAACCTGCTTACAATCAAGACAAGACCCCTGAGTTCATTATTAAGATTC
TACAGATTCTTGTGCCGCTCTTGATATTGGGTTTAGCCTTTGCGGTCAGA
CACTATACCAAGAAAGAGTAGGTCACAATATCAATAAAATGAGTCATCTC
CGGAATGGGAAGCTGGTGATTTGCATGAGCTTAGTTCTAGGACATTTATC
TTTTATTTACTTTCCTATGGTGTTTGGTTTTGCTGAAATTGAATAGTGGT
TCGTAGTCCACCAGAGACCATATTGTCTGTCTTCTCTTGAGTGTCTTGTT
TCTAATGTTTTTCATTGATGGTCATGGGATAATGTTTACTTTTATTGGAT
CCTTGGATGAAAAGCAAGGGGCAAG
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