FC929424

Overview
NameFC929424
Unique NameFC929424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9261 contig Ccv1_Contig9261:1..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA_LEPMC (Nitrate reductase [NADPH] OS=Leptosphaeria maculans GN=NIAD PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.100e-11
Identity = 33/102 (32.35%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  232 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEF 537
            +I + +E+  H   +  W +++ +VYD +SF++ HPGG + +ISA G DA+++F  + HS++A+ MM  Y+IG + P+   +     P  + A +    P F
Sbjct:  537 RIVELDELKWHESAEYPWFVVNDEVYDGTSFLEGHPGGAQSIISAAGLDASDEFMAI-HSETAKAMMPAYHIGTLSPTASKQLSLEEPTSKQASSSSLRPTF 637          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA_SOLLC (Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.437e-11
Identity = 32/81 (39.51%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGG-DEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K++   EV  HN +   W+I+ G +YD S F+ DHPGG D +LI+A G D T +F+ + HSD A+++++ + IG++
Sbjct:  532 MNTASKMYSMSEVRKHNSSDSAWIIVHGHIYDASRFLKDHPGGVDSILINA-GTDCTEEFDAI-HSDKAKKLLEDFRIGEL 610          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA_EMENI (Nitrate reductase [NADPH] OS=Emericella nidulans GN=niaD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.451e-11
Identity = 30/84 (35.71%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  232 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKR 483
            +I   EE   ++  +  W +++G+VYD ++F++ HPGG + +ISA G DA+ +F ++ HS++A++MM  Y+IG +D +++   R
Sbjct:  513 RIIDLEEFKKNSSDERPWFVVNGEVYDGTAFLEGHPGGAQSIISAAGTDASEEFLEI-HSETAKKMMPDYHIGTLDKASLEALR 595          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA_CUCMA (Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.451e-11
Identity = 28/73 (38.36%), Postives = 46/73 (63.01%), Query Frame = 1
Query:  238 HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            +   EV  HN  +  W+I+ G VYD + F+ DHPGG + ++   G D T +F+ + HSD A++M++ Y IG++
Sbjct:  546 YTLSEVKKHNSPQSAWIIVHGHVYDCTRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGEL 617          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: FAD5A_DICDI (Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum GN=fadA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.451e-11
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  232 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDV-GHSDSAREMMDKYYIGDIDPSTVPR 477
            K + + E+A HN   DCW+ + GKVYD++ ++  HPGG EVL+ A G+D TN FE     SD    ++  Y IG I     P+
Sbjct:   14 KQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPK 96          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA_PETHY (Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGG-DEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K++   EV  HN     W+I+ G VYD + F+ DHPGG D +LI+A G D T +F+ + HSD A+++++ + IG++
Sbjct:  531 MNTASKMYSMSEVKKHNSADSAWIIVHGHVYDATRFLKDHPGGIDSILINA-GTDCTEEFDAI-HSDKAKKLLEDFRIGEL 609          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA_CICIN (Nitrate reductase [NADH] OS=Cichorium intybus GN=NIA PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 25/69 (36.23%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  250 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            EV  HN     W+++ G +YD +SF+ DHPGG + ++   G D T +F+ + HSD A++++++Y +G++
Sbjct:  541 EVKKHNSADSAWIVVHGHIYDCTSFLKDHPGGSDSILLNAGTDCTEEFDAI-HSDKAKKLLEEYRVGEL 608          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA_PHYIN (Nitrate reductase [NADPH] OS=Phytophthora infestans GN=NIAA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.180e-11
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  247 EEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIG 450
            +EVA HN  K CW I    VYD + F+D+HPGG   ++   G D T++FE + HS  A +M+ KY IG
Sbjct:  543 DEVAKHNSKKSCWFICRDLVYDATPFLDEHPGGATSILLCGGTDCTDEFESI-HSTKAWQMLKKYCIG 609          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA3_MAIZE (Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  250 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            EV  H      W+++ G VYD ++F+ DHPGG + ++   G D T +F+ + HSD A+E++D Y IGD+
Sbjct:  527 EVRKHASQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKELLDTYRIGDL 594          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11
Identity = 26/80 (32.50%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K++   EV  H+     W+I+ G +YD + F+ DHPGG + ++   G D T +F+ + HSD A+++++++ IG++
Sbjct:  527 MNTASKMYSMSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKKLLEEFRIGEL 605          
The following BLAST results are available for this feature:
BLAST of FC929424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
NIA_LEPMC1.100e-1132.35Nitrate reductase [NADPH] OS=Leptosphaeria maculan... [more]
NIA_SOLLC1.437e-1139.51Nitrate reductase [NADH] OS=Solanum lycopersicum G... [more]
NIA_EMENI2.451e-1135.71Nitrate reductase [NADPH] OS=Emericella nidulans G... [more]
NIA_CUCMA2.451e-1138.36Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 ... [more]
FAD5A_DICDI2.451e-1140.96Delta(5) fatty acid desaturase A OS=Dictyostelium ... [more]
NIA_PETHY3.201e-1139.51Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA... [more]
NIA_CICIN3.201e-1136.23Nitrate reductase [NADH] OS=Cichorium intybus GN=N... [more]
NIA_PHYIN4.180e-1145.59Nitrate reductase [NADPH] OS=Phytophthora infestan... [more]
NIA3_MAIZE5.460e-1140.58Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1[more]
NIA1_TOBAC5.460e-1132.50Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CA01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929424 ID=FC929424; Name=FC929424; organism=Citrus clementina; type=EST; length=875bp
TGTAAGCAAGCGGATCACAGATTCCTCACTTTGTTTGATTTCAAATTCTA
CTTCTTTAGAGTTTAAACATAAAAGGGTTTCTTTATTTGCTGTTGTTTTG
ATCAAAAAGTTCCCTTTTTGGTTGGTGTTTGGGTCGATTCTACATTTTTA
CTTTATTTTTTTGTGGGGTTTTTTTGAATTTGTTGAGGTTTTGTGTTTAG
CTGCAGTAGCGAACAAATGGCCTCAGATCCAAAGATTCACCAGTTCGAAG
AGGTCGCCACGCACAACAAAACTAAGGATTGCTGGCTTATTATTTCTGGC
AAGGTGTATGATGTGTCCTCGTTCATGGATGATCACCCTGGAGGAGATGA
GGTTTTGATTTCTGCAACTGGGAAAGATGCAACAAATGACTTTGAAGATG
TGGGTCACAGTGACTCCGCTAGGGAGATGATGGACAAGTACTATATTGGT
GACATTGATCCCTCAACTGTTCCTCGGAAACGTGCATATATTCCACCGCA
GCAACCTGCTTACAATCAAGACAAGACCCCTGAGTTCATTATTAAGATTC
TACAGATTCTTGTGCCGCTCTTGATATTGGGTTTAGCCTTTGCGGTCAGA
CACTATACCAAGAAAGAGTAGGTCACAATATCAATAAAATGAGTCATCTC
CGGAATGGGAAGCTGGTGATTTGCATGAGCTTAGTTCTAGGACATTTATC
TTTTATTTACTTTCCTATGGTGTTTGGTTTTGCTGAAATTGAATAGTGGT
TCGTAGTCCACCAGAGACCATATTGTCTGTCTTCTCTTGAGTGTCTTGTT
TCTAATGTTTTTCATTGATGGTCATGGGATAATGTTTACTTTTATTGGAT
CCTTGGATGAAAAGCAAGGGGCAAG
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