FC929426

Overview
NameFC929426
Unique NameFC929426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10775 contig Ccv1_Contig10775:292..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIB_STRCH (Peptidyl-prolyl cis-trans isomerase B OS=Streptomyces chrysomallus GN=cypB PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.112e-12
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKK-HTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV--VEGMDVVKAIEKVGSSSGRTNKPV 255
            GTGG    G KFADE   +   T P +L+MANAGPGTNGSQFF+  + T WL GKH +FG+V    G  VV AI     ++ RT++P+
Sbjct:   79 GTGGP---GYKFADEFHPELGFTQPYLLAMANAGPGTNGSQFFLTVSPTAWLTGKHTIFGEVSGEAGRKVVDAIAAT-PTNPRTDRPL 162          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: CYP10_CAEEL (Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorhabditis elegans GN=cyn-10 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.112e-12
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 222
            G GGESI+G  F DE FV   KH   G +SMAN GP +N SQFF+  AK   LD K+ +FG+V++G D ++ IE +
Sbjct:   60 GKGGESIWGGPFEDE-FVSALKHDSRGCVSMANNGPDSNRSQFFITYAKQAHLDMKYTLFGKVIDGFDTLEEIETI 134          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL2_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibberella zeae GN=CYP8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.603e-12
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 GTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIAD 267
            G GG+S++G  F DE +    H G G LSMAN G  TN SQFF     T  LD KH VFG+VVE ++V+  +E V +  S R    ++I D
Sbjct:  382 GRGGQSVWGKYFDDEFDGPMTHNGRGTLSMANKGKNTNSSQFFFAYKPTPHLDRKHTVFGKVVENINVLSKMENVPTDGSNRPLNKILIKD 472          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL3_DICDI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dictyostelium discoideum GN=ppil3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 222
            G GGESI+  +F DE F    KH   GILSMAN+GP TNGSQFF+   K   L+  + VFG+++ G++V+  +EKV
Sbjct:   60 GRGGESIWKKQFKDE-FPSHLKHNTRGILSMANSGPDTNGSQFFITYGKHRSLNKVYTVFGKIIAGIEVLDLMEKV 134          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIA_MYCTU (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium tuberculosis GN=ppiA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.369e-11
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGS-SSGRTNKPVVI 261
            G GG    G KFADE   + +   P +L+MANAGPGTNGSQFF+   KT  L+ +H +FG+V+  E   VV+AI K  +  + R   PVVI
Sbjct:   89 GRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 176          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIA_MYCBO (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium bovis GN=ppiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.369e-11
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGS-SSGRTNKPVVI 261
            G GG    G KFADE   + +   P +L+MANAGPGTNGSQFF+   KT  L+ +H +FG+V+  E   VV+AI K  +  + R   PVVI
Sbjct:   89 GRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 176          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL3_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gibberella zeae GN=CYP10 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.788e-11
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    7 GGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGSSSGRTNKP 252
            GG SI+G  F DE     +H   G+LSMAN GPGTNGSQFF+   K   LDG + VFG+V+  EG+  +  +E V     R N+P
Sbjct:   67 GGRSIWGGAFEDEIRPALRHGARGVLSMANKGPGTNGSQFFITFDKAPHLDGLNTVFGRVIGDEGLATLAKMEAV--EVDRKNRP 149          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL2_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neurospora crassa GN=cyp-8 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.050e-11
Identity = 40/92 (43.48%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    1 GTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD-VVKAIEKVGS-SSGRTNKPVVIAD 267
            G GG SI+G  F DE      H+  GI+SMAN G  TN SQFF+       LD KH +F +V+EG D  + A+E V +  S R    +VI D
Sbjct:  389 GRGGSSIWGKNFEDEFEGPNTHSARGIVSMANKGKNTNSSQFFITYRPASHLDRKHTIFAKVIEGQDTTLTAMENVATDGSDRPLNKIVIKD 480          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: CYP7_YEAST (Peptidyl-prolyl cis-trans isomerase CYP7 OS=Saccharomyces cerevisiae GN=CPR7 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.875e-11
Identity = 46/107 (42.99%), Postives = 53/107 (49.53%), Query Frame = 1
Query:    1 GTGGESIYGSK--------------FADENFVKKHTGPGILSMANAG-PGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCG 273
            G GG SIY  K              F DEN + +   P  L MAN G P TN SQFF+ T     L+GKH +FGQVV G  VV+ IE     S G     V I+DCG
Sbjct:   90 GKGGCSIYADKEEVKTDDESFCYGNFEDEN-LGEFVEPFTLGMANLGSPNTNNSQFFITTYAAPHLNGKHSIFGQVVHGKSVVRTIENCRVDSDGVPESDVRISDCG 195          
The following BLAST results are available for this feature:
BLAST of FC929426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
PPIB_STRCH2.112e-1250.00Peptidyl-prolyl cis-trans isomerase B OS=Streptomy... [more]
CYP10_CAEEL2.112e-1250.00Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorha... [more]
PPIL2_GIBZE3.603e-1245.05Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibb... [more]
PPIL3_DICDI6.146e-1250.00Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dict... [more]
PPIA_MYCTU1.369e-1147.25Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIA_MYCBO1.369e-1147.25Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIL3_GIBZE1.788e-1147.06Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gibb... [more]
PPIL2_NEUCR3.050e-1143.48Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neur... [more]
CYP7_YEAST8.875e-1142.99Peptidyl-prolyl cis-trans isomerase CYP7 OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CA03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929426 ID=FC929426; Name=FC929426; organism=Citrus clementina; type=EST; length=550bp
GGAACCGGAGGCGAATCAATCTACGGCTCAAAATTCGCCGATGAGAACTT
CGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGAC
CCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGG
CTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGT
CGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGC
CCGTCGTGATCGCTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAA
TGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATG
TTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAA
TTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGT
TCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAA
GATAGGGCTTGTCTTGTTATATTACATAAAAAAAAAAAAAAAAAAAAAAA
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