FC929465

Overview
NameFC929465
Unique NameFC929465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15018 contig Ccv1_Contig15018:1..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H42_ASHGO (Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.930e-30
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 2
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAI RLAR GGVKRI+GLIY + R VLK  LE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAILRLARRGGVKRISGLIYEDVRAVLKSVLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_EUPCR (Histone H4 OS=Euplotes crassus PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.480e-29
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 2
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            + I G+TKPAIRRLAR GGVKRI+ L+Y ETR VLK FLE+VIRD+VTYTEHA+RKTVTA+DVVYALKRQG+TLYGFGG
Sbjct:   29 ETILGVTKPAIRRLARRGGVKRISSLVYEETRAVLKGFLESVIRDSVTYTEHAKRKTVTALDVVYALKRQGKTLYGFGG 107          
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.230e-29
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 2
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 379
            D ++GITKPAIRRLAR GGVKRING +Y ETR VLK FLE VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRTLYG+
Sbjct:   41 DALKGITKPAIRRLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRTLYGY 117          
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H41_BLEJA (Histone H4-1 (Fragment) OS=Blepharisma japonicum PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 2
Query:  149 DNIQGITKPAIRRLARPGGVKR-INGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 361
            +NIQGITKPAIRRLAR GGVKR ++GL+Y ETR VLK+FLENV+RDAVTYTEHARRKTVTA+DVVYALKRQG
Sbjct:   27 ENIQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLENVVRDAVTYTEHARRKTVTALDVVYALKRQG 98          
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.505e-26
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 2
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 379
            ++I GITKPAIRRLAR GGVKRI+  IY ETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRTLYGF
Sbjct:   30 EHINGITKPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRTLYGF 106          
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.322e-25
Identity = 57/72 (79.17%), Postives = 67/72 (93.06%), Query Frame = 2
Query:  149 DNIQGITKPAIRRLARPGGVKR-INGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 361
            +N QGITKPAIRRLAR GGVKR ++GL+Y ETR VLK+FLE+V+RDAVTYTEHA+R+TVTA+DVVYALKRQG
Sbjct:   18 ENNQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89          
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 2
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 370
            DNIQGITK  IRRLAR GGVKRI GLIY ETR V K+FLENVI  AVT TEHA+RKTVTAM VVY LKRQGRTL
Sbjct:   25 DNIQGITKCTIRRLARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRTL 98          
The following BLAST results are available for this feature:
BLAST of FC929465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H42_ASHGO2.930e-3083.54Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3[more]
H4_EUPCR2.480e-2979.75Histone H4 OS=Euplotes crassus PE=1 SV=3[more]
H4_ENTHI4.230e-2981.82Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H41_BLEJA3.960e-2784.72Histone H4-1 (Fragment) OS=Blepharisma japonicum P... [more]
H4_DICDI1.505e-2679.22Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H42_BLEJA6.322e-2579.17Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]
H4G_HUMAN6.989e-2481.08Histone H4-like protein type G OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CD12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929465 ID=FC929465; Name=FC929465; organism=Citrus clementina; type=EST; length=626bp
GGCACGAGGCAAAAAAGTAAAATTGTCACGAATCACTCTGATTTATTCAT
CAGACACGCAATATCAGAGAAAAATTATGTCGGGGCGTGGGAAGGGAGGC
AAGGGGTTGGGAAAGGGAGGAGCAAAGCGTCGCCGTAAGGTTCTTCGCGA
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCGTCCGG
GTGGGGTGAAGCGTATCAATGGGTTGATCTACTAAGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTAAA
ATGGGAATCTTGGTGTAATTTGTTAATGGTGTTTTCATTTTGTAACGTTA
ATTACCCCTATGATTTTGACTAGAATTGACGAGAGATCGTTGTGAATCTT
CTTGGTATAAAAAACAAAAAAAAAAA
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