FC929475

Overview
NameFC929475
Unique NameFC929475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10775 contig Ccv1_Contig10775:292..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929475 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 3.823e-38
Identity = 70/93 (75.27%), Postives = 83/93 (89.25%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGG+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CT KTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   72 GTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of FC929475 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 3.823e-38
Identity = 70/93 (75.27%), Postives = 83/93 (89.25%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGG+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CT KTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   72 GTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of FC929475 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.516e-38
Identity = 73/94 (77.66%), Postives = 80/94 (85.11%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTGGESIYG KF DE FV+K   PG+LSMANAGP TNGSQFF+CT  T WLDGKHVVFGQVVEGMDVVKAIEKVG+ +G T+K V +ADCGQLS
Sbjct:   79 GTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
BLAST of FC929475 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.453e-37
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGG+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM +V+A+E  GS +G+T+K + IA+CGQL
Sbjct:   72 GTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164          
BLAST of FC929475 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.578e-36
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGG+SIYG+KF DENF  KHTGPGIL MANAGP TNGSQFF+ TAKT WLD +HVVFG VVEGMDVVK +E +GS SG+TNK + + DCGQ+
Sbjct:   72 GTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164          
BLAST of FC929475 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.673e-36
Identity = 69/93 (74.19%), Postives = 77/93 (82.80%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGGESIYG KF DENF +KHTGPG+LSMANAGP TNGSQFF+CT KT WLDGKHVVFG+VVEG+D+V  +E  GSSSG      +IADCGQL
Sbjct:   79 GTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171          
BLAST of FC929475 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.673e-36
Identity = 70/93 (75.27%), Postives = 79/93 (84.95%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGGESIYGSKF DENF  KHTGPGILSMAN+GP TNGSQFF+CT KT WLDGKHVVFG+VV+G +VVKA+E VGS  G  ++ VVI DCG+L
Sbjct:   79 GTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
BLAST of FC929475 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.971e-36
Identity = 69/93 (74.19%), Postives = 79/93 (84.95%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGG+SIYG KF DENFV KHTGPG LSMANAG  TNGSQFF+CT KT WLDGKHVVFGQVV GM+VV+ +E+ GS+SG+ +K VVI DCG+L
Sbjct:  223 GTGGKSIYGGKFEDENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGEL 315          
BLAST of FC929475 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.971e-36
Identity = 71/93 (76.34%), Postives = 77/93 (82.80%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGGESIYG+KFADENF  KH G G LSMANAG  TNGSQFF+C A T+WLDGKHVVFG V EGMDVVK +E  GS SG+T KPVVIA+CGQL
Sbjct:   87 GTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179          
BLAST of FC929475 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.041e-35
Identity = 67/93 (72.04%), Postives = 77/93 (82.80%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGG+SIYG KFADENF  KHT PGILSMANAG  TNGSQFF+CTA T WLDGKHVVFG V +G+D++K +E  GS SG+T+K + IADCGQL
Sbjct:   72 GTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          
The following BLAST results are available for this feature:
BLAST of FC929475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
PPIA_SAGOE3.823e-3875.27Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ... [more]
PPIA_AOTTR3.823e-3875.27Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
CYPH_MAIZE8.516e-3877.66Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
PPIA_RABIT1.453e-3775.27Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPIA_BLAGE3.578e-3673.12Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
CYP7_CAEEL4.673e-3674.19Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CP19C_ARATH4.673e-3675.27Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
PPIE_RHIOR7.971e-3674.19Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
PPIA_DICDI7.971e-3676.34Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
PPIA_HEMPU1.041e-3572.04Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CE11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929475 ID=FC929475; Name=FC929475; organism=Citrus clementina; type=EST; length=550bp
GGAACCGGAGGCGAATCAATCTACGGCTCAAAATTCGCCGATGAGAACTT
CGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGAC
CCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGG
CTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGT
CGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGC
CCGTCGTGATCGCTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAA
TGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATG
TTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAA
TTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGT
TCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAA
GATAGGGCTTGTCTTGTTATATTACATAAAAAAAAAAAAAAAAAAAAAAA
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